PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013611353.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 401aa MW: 45024.6 Da PI: 4.7498 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.3 | 2.9e-34 | 52 | 143 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d++l+ +isw +g sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++ weF+++ F +g+k+ll++ XP_013611353.1 52 FLSKTFDLVDDPSLDPVISWGPTGASFVVWDPVEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFLRGQKHLLKN 137 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r++s XP_013611353.1 138 IHRRRS 143 ***987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.88E-35 | 47 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.9E-58 | 48 | 141 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.1E-36 | 49 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.6E-18 | 52 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-30 | 52 | 141 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-18 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 91 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-18 | 103 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MSPEKDGVSI PTPLSIPIST RPESVPLHVD TDVASPLPMP LDILHGNPIP PFLSKTFDLV 60 DDPSLDPVIS WGPTGASFVV WDPVEFARII LPRNFKHNNF SSFVRQLNTY GFRKIDTDKW 120 EFANEAFLRG QKHLLKNIHR RRSPQSNQAC SSSITSHQSQ GSPTEVGEEI EMLRKERRAL 180 MEEMVELQQQ NRGTARHVDT VNQKLKAAEQ RQKQMLSFLA KLFQNPGFLD RLKSLKGEGG 240 GLGFKKARKK FIKHSPTGGE IVKYEADDWE RLLMSEEEDT ENILPSNQGM TSTDPKGKNL 300 MNPSGEETMN QDYFLPFPTP EGLIKQEETW SMGFDTTIPS FSNEDVWGNT MDYNVAEFGS 360 VPETSSGGCL PDVCWEQFAA GMTETGFNWP PGDDTTPMDD P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-26 | 49 | 146 | 17 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013611353.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013611350.1 | 0.0 | PREDICTED: heat stress transcription factor A-3 | ||||
Refseq | XP_013611351.1 | 0.0 | PREDICTED: heat stress transcription factor A-3 | ||||
Refseq | XP_013611352.1 | 0.0 | PREDICTED: heat stress transcription factor A-3 | ||||
Refseq | XP_013611353.1 | 0.0 | PREDICTED: heat stress transcription factor A-3 | ||||
Refseq | XP_013611354.1 | 0.0 | PREDICTED: heat stress transcription factor A-3 | ||||
Refseq | XP_013726260.1 | 0.0 | heat stress transcription factor A-3 | ||||
Swissprot | Q8GYY1 | 0.0 | HSFA3_ARATH; Heat stress transcription factor A-3 | ||||
TrEMBL | A0A078FAB7 | 0.0 | A0A078FAB7_BRANA; BnaCnng02620D protein | ||||
TrEMBL | A0A0D3EI36 | 0.0 | A0A0D3EI36_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EQ72 | 0.0 | A0A3P6EQ72_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g181780.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 0.0 | heat shock transcription factor A3 |