PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013611273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 641aa MW: 70454.5 Da PI: 7.8647 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.8 | 3.3e-07 | 265 | 285 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G Ck Gd C +aHg XP_013611273.1 265 PCPDFKK-GSCKQGDACEYAHG 285 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 3.26E-16 | 11 | 145 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.1E-18 | 15 | 160 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.3E-9 | 57 | 128 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.16 | 59 | 89 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.202 | 59 | 166 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.86E-14 | 61 | 143 | No hit | No description |
SMART | SM00248 | 8.5E-5 | 94 | 126 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.568 | 94 | 129 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3300 | 130 | 163 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.5E-4 | 260 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 265 | 285 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 265 | 287 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 265 | 287 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-4 | 293 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 58 | 295 | 318 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MCGLSKNDSE LEHSFSALLE FAADNNVEGF KHQLSLVPCI NQMGLWYRRQ RFVRRMALEQ 60 RTPLMVASIY GSVDVVKLIL SFPEAELNLS CGPDKSTALH CAASGASANS LGVVKLLLSA 120 GADPNIPDAH GNRPVDVLVA SPHAPGLRTV LEEILKKDED PSSSLGSSLR SLSSSPENGS 180 SLLSLGSVSS PTKVDASEKK EYPLDPSLPD IKSGIYSTDE FRMFSFKIRP CSRAYSHDWT 240 ECPFAHPGEN ARRRDPRKFH YTCVPCPDFK KGSCKQGDAC EYAHGVFECW LHPAQYRTRL 300 CKDGTSCNRR VCFFAHLKEE LRPLYASTGS GLPSPSSAAA TMDMASVLNM LPGSPSSAPI 360 SPSATMGWPQ QNNIPALHLP GSNVQLSRLR SSLNARDIIP SEQLSMMQEF EMQRMSSPRF 420 MNHHSARPKT LLTPSNLEEL FSAEVASSPR FSDQLGVSSV LSPSHKSALL NQLQSNKQQS 480 MLSPIKTNIM SSPKNVEHHS PRAMEPISPM NSRMKQQLHP RSLSSRDFGS SMMPTDSGSP 540 LSPWSSWDQN HGNKVDWSVQ SDELGRLRKS HSLAYNNNSN READVTWVQQ LVKESASPRN 600 SNGAMNMNGS RPLVQGGSSV NPPHSESDII DAWLEQLQLD R |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013611273.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013611273.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q9LXV4 | 0.0 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A0D3EFY3 | 0.0 | A0A0D3EFY3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6E8A9 | 0.0 | A0A3P6E8A9_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g169300.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |