PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610894.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 157aa MW: 17864.7 Da PI: 6.7902 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.3e-05 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H XP_013610894.1 40 FPCQYCPRKFYTSQALGGHQNAH 62 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.25E-6 | 38 | 67 | No hit | No description |
PROSITE profile | PS50157 | 11.053 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MAEPPPSSLH HFVGPSSKHR SSNKKHSFSG PQHPTIHRLF PCQYCPRKFY TSQALGGHQN 60 AHKRERAAAR RNLGVVSDHA PNILDDATFL LPYPCNXYPN PPQVSSWSIP DQQTVTMVSG 120 YDPYPYPYPY GYYTFEVSGV MEEEEEEEPQ LDLSLRL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: First expressed in developing carpel primordia, and later in stamens and ovules of flower buds. {ECO:0000269|PubMed:15240552}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium. {ECO:0000269|PubMed:15240552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610894.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189564 | 1e-163 | AC189564.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009B23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610894.1 | 1e-114 | PREDICTED: LOW QUALITY PROTEIN: zinc finger protein KNUCKLES | ||||
Swissprot | Q9FFX4 | 7e-47 | KNU_ARATH; Zinc finger protein KNUCKLES | ||||
TrEMBL | M4CX40 | 1e-94 | M4CX40_BRARP; Uncharacterized protein | ||||
STRING | Bra008787.1-P | 2e-95 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6966 | 20 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14010.1 | 2e-34 | C2H2 family protein |
Publications ? help Back to Top | |||
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