PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 463aa MW: 52144.8 Da PI: 6.3624 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 43.3 | 5e-14 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C++t+TplWR+gp ++ LCnaCG ++r kg+ XP_013610850.1 7 CCHCRVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 99**************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.0E-9 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-10 | 5 | 46 | No hit | No description |
CDD | cd00202 | 7.88E-16 | 6 | 63 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.6E-11 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 10.884 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.8E-12 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 5.0E-10 | 241 | 336 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MGKQGPCCHC RVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RSEGDQIEIE 60 DHRVQKTMMI NKMSMNKKIL KRKSSHQENF TVKRTSFELN NGFKNEEASN RSSSGSVVSN 120 SESCDQSNAW ETTFPCKKRT CVVVGRPKAA SSVEKLTKDL FSILQEQQQS SCLSGCSEVD 180 LLFENESPMV IGHGSVLMRD EESEASSLLV ESRKSVSVRS VEFEVNRVQR SLNLGGNDIK 240 QEQHKTKPQV LGRPSLPLCN IDLKDIFNFD EFMKKFTEEE QQKLMKLLPG VDSVDLPDSL 300 RSMFESSQFK DNFSLFQQLV ADGVFETLSS SSKPEEFKRL AKLALSDPNK SHLLESYCML 360 KEQRKGSEDS VTTSERPSES LSQNFSETRG VMKSPKEVMK MRSKHNGTEE IVENSVSSFN 420 NHMRYGGPMV FSSEDNDICD EEDVLVDVPS NGSFPQAELL HMI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183493 | 0.0 | AC183493.1 Brassica oleracea Contig B, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610850.1 | 0.0 | PREDICTED: GATA transcription factor 27-like isoform X1 | ||||
Refseq | XP_013712804.1 | 0.0 | GATA transcription factor 27-like isoform X1 | ||||
Swissprot | Q5PP38 | 0.0 | GAT27_ARATH; GATA transcription factor 27 | ||||
TrEMBL | A0A0D3E765 | 0.0 | A0A0D3E765_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g069320.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 0.0 | GATA transcription factor 27 |