PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 189aa MW: 21449.7 Da PI: 9.5631 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.8 | 3.2e-14 | 13 | 61 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k++e++ r +tfskRr+gilKK +E+ Cd+e++ + fs++g ++ XP_013610790.1 13 KKVESYEARRTTFSKRRAGILKKMNEIIAVCDVEASFLGFSESGYPLTF 61 5789***************************************977776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.5E-16 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.184 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-19 | 5 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-12 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-13 | 14 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-12 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-12 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MKHTKGKQKI EMKKVESYEA RRTTFSKRRA GILKKMNEII AVCDVEASFL GFSESGYPLT 60 FAHPSMEDAV DRVKCSLGHE PSGKDDASVG SLVEAYKRQK NEELKKNLCD LAEELKMVKE 120 KEKKMVEKKK IKESKNEWSN ILNEGVNKDE LKRVHQAFVE LNYSLSGKAL QRLGKDGDGS 180 SCSCRTWTL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610790.1 | 1e-137 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A0D3E241 | 1e-136 | A0A0D3E241_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g017920.1 | 1e-136 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 6e-42 | AGAMOUS-like 57 |