PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610764.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 504aa MW: 55775.7 Da PI: 7.7765 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_013610764.1 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.7E-6 | 95 | 118 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 95 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.0E-5 | 96 | 118 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.7E-6 | 168 | 193 | No hit | No description |
SMART | SM00355 | 230 | 173 | 193 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MMNEDILLHQ QVQQQEENMS NLTSASGDQA SVSSGNRTEV SGSNYFPHHQ QQEEQQQFSV 60 PESQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRSNK EVIRKKVYVC PGASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK 180 KYAIQSDCKA HSKTCGTKEY RCDCGTLFSR RDSFITHRAF CEALAEETAR EVVIPQNQNH 240 QPNPRMIHQS SSSHHQAQPT MNVSSSSHNI TNSLYFETNH NGTNNSNTSS NHLHTFPMKI 300 EQQQSNDHII NYHHHSIPPW LAPQPQDLTS SNPNPSNGGG GGLFSLAASP AMSATALLQK 360 AAQMGSTKTP PLPPTTVSER SAHHNNLTTT MAAMMTSSSG FISSTNNNQV LFQDYNASEF 420 DHSGGEEAFD DTFCGFLRTN VDTTTTSGSD KNKSGGGEGE EGLTRDFLGL RPLMSHNEIL 480 SFAGLGNCIS GSASDQLHPK PWQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-32 | 169 | 237 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 4e-32 | 169 | 237 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 135 | KLKQRSNKEVIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00355 | DAP | Transfer from AT3G13810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610764.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF361797 | 0.0 | AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. | |||
GenBank | AY091693 | 0.0 | AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610759.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like isoform X1 | ||||
Swissprot | Q9LRW7 | 0.0 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | A0A0D3ADV3 | 0.0 | A0A0D3ADV3_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g134920.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 0.0 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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