PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013610759.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 552aa MW: 61541.8 Da PI: 7.8804

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013610759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_013610759.1 144 FVCEICNKGFQRDQNLQLHRRGH 166 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	143	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.48E-6	143	166	No hit	No description
PROSITE profile	PS50157	10.949	144	166	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	144	166	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	146	166	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.48E-6	216	241	No hit	No description
SMART	SM00355	230	221	241	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MYLLNLLFVS VFLSVSVYIY LYIDLKFSFC LFLFFFLVHF FVSLKALVMM NEDILLHQQV 60 QQQEENMSNL TSASGDQASV SSGNRTEVSG SNYFPHHQQQ EEQQQFSVPE SQPQKKRRNQ 120 PGNPDPESEV IALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV 180 IRKKVYVCPG ASCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AIQSDCKAHS 240 KTCGTKEYRC DCGTLFSRRD SFITHRAFCE ALAEETAREV VIPQNQNHQP NPRMIHQSSS 300 SHHQAQPTMN VSSSSHNITN SLYFETNHNG TNNSNTSSNH LHTFPMKIEQ QQSNDHIINY 360 HHHSIPPWLA PQPQDLTSSN PNPSNGGGGG LFSLAASPAM SATALLQKAA QMGSTKTPPL 420 PPTTVSERSA HHNNLTTTMA AMMTSSSGFI SSTNNNQVLF QDYNASEFDH SGGEEAFDDT 480 FCGFLRTNVD TTTTSGSDKN KSGGGEGEEG LTRDFLGLRP LMSHNEILSF AGLGNCISGS 540 ASDQLHPKPW QG

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MYLLNLLFVS VFLSVSVYIY LYIDLKFSFC LFLFFFLVHF FVSLKALVMM NEDILLHQQV  60
QQQEENMSNL TSASGDQASV SSGNRTEVSG SNYFPHHQQQ EEQQQFSVPE SQPQKKRRNQ  120
PGNPDPESEV IALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV  180
IRKKVYVCPG ASCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AIQSDCKAHS  240
KTCGTKEYRC DCGTLFSRRD SFITHRAFCE ALAEETAREV VIPQNQNHQP NPRMIHQSSS  300
SHHQAQPTMN VSSSSHNITN SLYFETNHNG TNNSNTSSNH LHTFPMKIEQ QQSNDHIINY  360
HHHSIPPWLA PQPQDLTSSN PNPSNGGGGG LFSLAASPAM SATALLQKAA QMGSTKTPPL  420
PPTTVSERSA HHNNLTTTMA AMMTSSSGFI SSTNNNQVLF QDYNASEFDH SGGEEAFDDT  480
FCGFLRTNVD TTTTSGSDKN KSGGGEGEEG LTRDFLGLRP LMSHNEILSF AGLGNCISGS  540
ASDQLHPKPW QG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-32	217	285	3	71	Zinc finger protein JACKDAW
5b3h_F	6e-32	217	285	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	183	KLKQRSNKEVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00355	DAP	Transfer from AT3G13810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013610759.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF361797	0.0	AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610759.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Swissprot	Q9LRW7	0.0	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A0D3ADV3	0.0	A0A0D3ADV3_BRAOL; Uncharacterized protein
STRING	Bo1g134920.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	0.0	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]