PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610621.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 247aa MW: 26763.9 Da PI: 10.2756 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52.2 | 1.6e-16 | 63 | 148 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Li+a e++ +l+rg+lk+++Weev++++ ++ ++ +qCk++++ ++k+yk++k ++++ sss++++fd+l+ XP_013610621.1 63 CWSEKATGVLIDAWGEIHLELSRGNLKQKHWEEVAERVrskeDNGKAPKTDVQCKNRIDTVKKKYKQEKLTSGG----SSSSWVFFDKLD 148 7*************************************8887778899*********************99998....5778******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.6E-25 | 61 | 150 | No hit | No description |
Gene3D | G3DSA:3.40.50.620 | 8.7E-4 | 63 | 120 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MADDEDQIRS HSDSPDPSSS PPPSGKLTVT VASPAPSQKD PDAPPLAPLP IKSSGGGGGR 60 EDCWSEKATG VLIDAWGEIH LELSRGNLKQ KHWEEVAERV RSKEDNGKAP KTDVQCKNRI 120 DTVKKKYKQE KLTSGGSSSS WVFFDKLDRL IGSTAKISSG GSRGLNLYHQ QGKAETPRFG 180 GKARVTSASF KRLPLRRKRN VSDSDSVFEA GVSEDSGDSL PPPPLSKKKQ GGGNKWRELS 240 RAIMRFG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610621.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610621.1 | 1e-179 | PREDICTED: trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 9e-88 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A0D3ADS0 | 1e-178 | A0A0D3ADS0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GET3 | 1e-178 | A0A3P6GET3_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g134590.1 | 1e-178 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6262 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 2e-69 | sequence-specific DNA binding transcription factors |