PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610281.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 468aa    MW: 51991.5 Da    PI: 5.5638
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610281.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00117294123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C  Cgk+F++   L  H r H
  XP_013610281.1 72 HICCECGKRFKSGKALGGHKRIH 94
                    68*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.04E-66897No hitNo description
Gene3DG3DSA:3.30.160.609.3E-56994IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.977299IPR007087Zinc finger, C2H2
SMARTSM003550.197294IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-77294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM003552.9124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954124146IPR007087Zinc finger, C2H2
PfamPF139120.0056126147IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576673.48E-7313336No hitNo description
SMARTSM003550.55314336IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-10314338IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411314341IPR007087Zinc finger, C2H2
PROSITE patternPS000280316336IPR007087Zinc finger, C2H2
SuperFamilySSF576673.48E-7378405No hitNo description
SMARTSM003550.14383405IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494383405IPR007087Zinc finger, C2H2
PfamPF139121.2E-11383406IPR007087Zinc finger, C2H2
PROSITE patternPS000280385405IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDQCRFSHGR PRFGSIKFKV PNSSQPFISQ KRKEMEEEDQ AEEEAKSIGF REEEEGEDDD  60
GAKSIEEEEK KHICCECGKR FKSGKALGGH KRIHVLEARK FSMVRPKMVA GVVGRSDERD  120
DFEVDCCVCH KKFTSMKALY GHMRFHPDRG WKGVLPPHHH HPLDHDSGEF ISSDYDDDDD  180
DDDGDHEDDD DDENSELWDN HWELDNVVDL KDSIKGWAVT GKRGRRSALK DPPPEDVDAK  240
DLLFLATTAE AVDLDAAETC DSRSVEEMMK KRKKKRKRLS EMEKESTSSH DHHQLEVGAA  300
SAAEEGGGGA REKHVCVTCN KSFASYQALG GHRASHNKVK ISENHQARAN SEALLLGTEA  360
MMTGLASAQG PNTSLSIGNK GDHVCNICQK SFTTGQALGG HKRCHWPGPT SNEAATAPVP  420
ASNESATTAP TPLVACSSSQ VTETVQEEKK LKRKFLEFDL NELPPNEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269273KKRKK
2269277KKRKKKRKR
3271277RKKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610281.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610281.10.0PREDICTED: zinc finger protein ZAT4
TrEMBLA0A0D3EBN60.0A0A0D3EBN6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E2D70.0A0A3P6E2D7_BRAOL; Uncharacterized protein
STRINGBo9g123640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-137C2H2 family protein