PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610200.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 388aa    MW: 43957.1 Da    PI: 7.0372
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07231253123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F+r  nL+ H+r H
  XP_013610200.1 231 HYCQICGKGFKRDANLRMHMRAH 253
                     68*******************99 PP
2zf-C2H212.20.00054353368621
                     TTEEESSHHHHHHHHH CS
         zf-C2H2   6 CgksFsrksnLkrHir 21 
                     Cg++Fsrk+ L++H +
  XP_013610200.1 353 CGTRFSRKDKLTSHVS 368
                     **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.35E-6229256No hitNo description
SMARTSM003550.0028231253IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-6231258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632231258IPR007087Zinc finger, C2H2
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
SMARTSM00355220283316IPR015880Zinc finger, C2H2-like
SMARTSM0035555321343IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-4343369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355310349373IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MNQGGLIMNT GECSMSCCSE TNSNSTIYTN SMAAATRSSG DDISLSLLFN LSTIQDKVHE  60
IQSLVNFFLI SPSKNNQSSE STSSLAAANV ESLVQDIITA ASSMMLTCQN LQISTSDNNN  120
IDTSQTTDGM FMEFSQNFDP DHDFVQESST NLLGVRDFDP DHDFLQESSS NLLGIQEREH  180
VSLIDQSTQS LDWHSIQTTN PKTDHRRFKS RTGSYEIVEL SVEDLLAKYT HYCQICGKGF  240
KRDANLRMHM RAHGDEYKTR EALINPTSRD KNVEYSSLTR HYYSCPQHGC RWNQRHDKFQ  300
PLKSVICAKN HYKRSHCPKI YMCRRCNVKH FSVLSDLRTH EKHCGDIKWV CSCGTRFSRK  360
DKLTSHVSLF SGHSPAHEPL PQPPMISL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610200.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT241e-168STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0D3EDA20.0A0A0D3EDA2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DNG70.0A0A3P6DNG7_BRAOL; Uncharacterized protein
STRINGBo9g148110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-161C2H2 family protein