PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 317aa MW: 37609.9 Da PI: 6.7141 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.1 | 6.3e-25 | 48 | 130 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++gf r+++qCk+kw+nl +ryk+++++e + ++++py+++++ XP_013610158.1 48 QWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEA---IRQQFPYYNEIQ 130 7********************************************************************85...56689****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.7E-4 | 45 | 107 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.31E-5 | 47 | 121 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 1.21E-21 | 47 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-5 | 48 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.9E-20 | 48 | 132 | No hit | No description |
PROSITE profile | PS50090 | 8.142 | 49 | 105 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MDQRNPFHHH HHHHHQHHHL IQQQQLPPPP QSTTAAMDPG GGGERIPQWS LEETKELLGI 60 REELDQTFME TKRNKLLWEV VAAKMADKGF ARTAEQCKSK WKNLVTRYKA CETTEPEAIR 120 QQFPYYNEIQ SIFTARMQRV LWSEATEAST SSKRKNHQFS SDEEEEEEAE EPNQSINEEL 180 VAFVETQEKV ITTSTCTNPR KRAKKGKGIT GSTKAETAGS TLKEILEDFM RQTVKMEKEW 240 RDAWEMKERE REKRETEWRR RMSELEEERS ATERRWMERE NERRLREEAR AQKRDTIIDI 300 LLSKLNKDKN DDQHQGF |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610158.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY271677 | 0.0 | AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds. | |||
GenBank | BT028926 | 0.0 | BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610158.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3a-like | ||||
Refseq | XP_013732747.1 | 0.0 | trihelix transcription factor GT-3a | ||||
Swissprot | Q9SDW0 | 1e-143 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A078FAR2 | 0.0 | A0A078FAR2_BRANA; BnaCnng03970D protein | ||||
TrEMBL | A0A0D3EIG8 | 0.0 | A0A0D3EIG8_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g186070.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2215 | 28 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 1e-132 | Trihelix family protein |