PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610080.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 265aa    MW: 28823.4 Da    PI: 7.6394
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00083181203123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+  Fs+   L  H+r+H
  XP_013610080.1 181 HECSICKAEFSSGQALGGHMRRH 203
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.24E-9110133No hitNo description
PfamPF139125.9E-12110135IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45111138IPR007087Zinc finger, C2H2
SMARTSM003550.049111133IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-9176203No hitNo description
Gene3DG3DSA:3.30.160.604.9E-4178205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-12180205IPR007087Zinc finger, C2H2
SMARTSM003550.031181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307181205IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTSVHEETRL VLLVKGKRTK RQRSASPHMN AEAVSGICSE EPSLEAREEG AGEVEFQGAT  60
EEDQDMANCL MLLSQGHKEN GSGDHSSKHK LDFLSYKKPA ASLGLGLEGV YQCQTCDKSF  120
HSFQALGGHR ASHKKPKLGA IVLKCHEKKS SSASAVETAK GSFLSLQVTS SDGSKKPEKT  180
HECSICKAEF SSGQALGGHM RRHRGLIVNA NATSSHHQES IRPKNFLELD LNLPAPEDES  240
KFVFASKDQI ILFTTASNSL IDCHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325221e-165AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610080.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D3EI520.0A0A0D3EI52_BRAOL; Uncharacterized protein
STRINGBo9g181940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-144C2H2 family protein