PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609906.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 161aa MW: 17085.9 Da PI: 9.5605 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H XP_013609906.1 83 HPCPICGVEFPMGQALGGHMRRH 105 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.4E-6 | 38 | 105 | No hit | No description |
Pfam | PF13912 | 2.2E-11 | 39 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.871 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.6 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.079 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.681 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.4E-11 | 83 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MVAISEIKLT VETTAAANCL MLLSRVGQEN VDGGSAKRVF TCKTCLKEFH SFQALGGHRA 60 SHKKPNNESL SGLIKKSKAA SSHPCPICGV EFPMGQALGG HMRRHRNESG GAGALVTREL 120 LSEAALTTLK KSSSGRLACL DLSLGMVENL NLKLELGRPV C |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609906.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ166621 | 0.0 | DQ166621.1 Brassica carinata C2H2 zinc finger protein 1 (ZF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609906.1 | 1e-113 | PREDICTED: zinc finger protein ZAT12-like | ||||
Refseq | XP_013713019.1 | 1e-113 | zinc finger protein ZAT12 | ||||
Swissprot | Q42410 | 3e-90 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A0D3ECW7 | 1e-112 | A0A0D3ECW7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6TZ53 | 1e-112 | A0A3N6TZ53_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6E0C5 | 1e-112 | A0A3P6E0C5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g140820.1 | 1e-113 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 1e-92 | C2H2 family protein |