PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609850.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 136aa    MW: 15093.9 Da    PI: 7.9892
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-053557123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H++ H
  XP_013609850.1 35 YECTFCKRGFTNAQALGGHMNIH 57
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.68E-73262No hitNo description
Gene3DG3DSA:3.30.160.605.4E-53260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00973557IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1363562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MQNMECDRSS SSTSSESGAV LHHLTTSSTV TRRMYECTFC KRGFTNAQAL GGHMNIHRRD  60
RLNKAAMQQN DADVALSSAR RCFHVASSDR GGYEQVESVV LRATTNLSLR IGSMVTRREN  120
VVVEGDEIDL ELRLGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895911e-135AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609850.18e-96PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A0D3E6A12e-94A0A0D3E6A1_BRAOL; Uncharacterized protein
STRINGBo9g059250.13e-95(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-56C2H2 family protein