PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609709.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 305aa    MW: 35180.7 Da    PI: 9.3927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609709.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.3e-1917109199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv +p+ ++  + lv+p  f+ ++ ++k  + ++ l de gr W+v+ + + + g +v++kGW++F++++ L+ gDf+vF++dg s+f   vk
  XP_013609709.1  17 FFKVYLPEFSF--RKLVIPPAFV-NI-LEKLLPNQVGLLDEIGRLWKVETKTEEGVGDVVFKKGWEKFANDHSLEFGDFLVFSYDGVSRF--SVK 105
                     77777555455..459*******.44.55678889***************99999999***************************99999..*** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_013609709.1 106 IFDK 109
                     **98 PP
2B335.32e-112052881598
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                     ++ +p +f++++g++ ee+    l de+g++W +k+ +  +++r+   + W +F+++++L +   ++F+++  ++ ++ + +v++fr
  XP_013609709.1 205 QMEIPTTFLKSNGIEMEEN--FELCDENGKKWPMKVVIHDRGQRF-SPGLWLSFCRSHKLSTSNKCLFEFIvrSDgTCNQVLVRIFR 288
                     689*********9998886..6666***********776666665.5668*******************773244455566666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-2211112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-2214112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.18415110IPR003340B3 DNA binding domain
CDDcd100171.87E-1817108No hitNo description
SMARTSM010192.3E-1517110IPR003340B3 DNA binding domain
PfamPF023622.7E-1717110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-16188288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-16188285IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8191290IPR003340B3 DNA binding domain
CDDcd100171.23E-9193288No hitNo description
SMARTSM010191.2E-7195290IPR003340B3 DNA binding domain
PfamPF023626.6E-10205288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVERSEKGSY ARKDTEFFKV YLPEFSFRKL VIPPAFVNIL EKLLPNQVGL LDEIGRLWKV  60
ETKTEEGVGD VVFKKGWEKF ANDHSLEFGD FLVFSYDGVS RFSVKIFDKN GCKKYLVAVT  120
TADRSRVAVE KEPVLVKPVD DISTKRCGKS RKRVSVKEEP SGNRVIHPCE MGCVPENKKH  180
KGFEEPVYKP KNPHFVRNIT DCFRQMEIPT TFLKSNGIEM EENFELCDEN GKKWPMKVVI  240
HDRGQRFSPG LWLSFCRSHK LSTSNKCLFE FIVRSDGTCN QVLVRIFRGR MLNTVTINSY  300
QVLAM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609709.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609709.10.0PREDICTED: putative B3 domain-containing protein At5g66980 isoform X1
SwissprotQ9FGD21e-110Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A0D3E2J70.0A0A0D3E2J7_BRAOL; Uncharacterized protein
STRINGBo9g020470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-113B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]