PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609563.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 303aa    MW: 34016.3 Da    PI: 5.436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12142185654
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  A+eY+k+L
  XP_013609563.1 142 LMAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDAIEYMKEL 185
                     589*********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.561136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15140195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10142185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-5143185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEWTQISKQE SNNHDFFPSG RNLEYLCFNN PLHEDDNNVD HTFSSLMDLI SQPPPLLHQP  60
PQPSSSPTPF FSSTFDYPLL ETLQDVIESP YYPPLGISAS QEGNNNDNSS PFVEESKSLM  120
STGETNKKKR NKKVVGQPSK NLMAERRRRK RLNDRLSMLR SIVPKITKMD RTSILGDAIE  180
YMKELLDKIN KLQQLGSNSD LKDSLTSTNQ SMVRNSPKFE VDQREVNTHI DICCSTQPGL  240
LLSTVGTLEI NLGLEIQQCV ISCFSDFSLQ ATCSEVAGQR ECITSEDVKQ ALLKNAGYGG  300
RCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125132NKKKRNKK
2127149KKRNKKVVGQPSKNLMAERRRRK
3144151ERRRRKRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in leaves and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609563.10.0PREDICTED: transcription factor bHLH61
SwissprotQ9LXA91e-121BH061_ARATH; Transcription factor bHLH61
TrEMBLA0A0D3EGE80.0A0A0D3EGE8_BRAOL; Uncharacterized protein
STRINGBo9g171940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-118bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]