PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609353.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 364aa    MW: 40105.1 Da    PI: 6.8057
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609353.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.43.7e-32141240197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 
                     k+fqrl+se+Dei++LqG++df++++g +p++++daf+++vkk i+f++sk q+v+K++r KkKf + vk+     +++++++ sk+ dqk+fel
  XP_013609353.1 141 KMFQRLFSETDEIAMLQGFLDFTSTRG-DPYENMDAFCDYVKKLIDFNASKAQIVTKLQRCKKKFVNIVKNalkkGRTEDKVTCSKDLDQKAFEL 234
                     58*************************.9*************************************99998776678889999************ PP

          DUF573  92 skkiWg 97 
                     s+kiWg
  XP_013609353.1 235 SRKIWG 240
                     *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.1E-27143240IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAPKDKIENP PAASSSEEEE EEESGSSVEA SGSSSDDEAG DVQSKLTQKP PAASTKKKPE  60
SDSEEDESES DSDSEPPTKT KPLNAVVTSG SVAASSSTAK RSLKQADDEE PKKKKVKASA  120
TEHPKKKDEE VKKISGEDAK KMFQRLFSET DEIAMLQGFL DFTSTRGDPY ENMDAFCDYV  180
KKLIDFNASK AQIVTKLQRC KKKFVNIVKN ALKKGRTEDK VTCSKDLDQK AFELSRKIWG  240
ANGVLPAKPR KKSNDVVKSP PSPSHTPKKE VEKRKGSVVV DAHLSSSREM ALFFKAENVS  300
VFGLDESTVS AVWDMVEDGP KKREMEEKLK KLKDMQVELC LQRTALLDTT AKMIFKDYAS  360
SSSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609353.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894150.0AC189415.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609353.10.0PREDICTED: mediator-associated protein 1-like
SwissprotQ9SB421e-104STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A0D3A6790.0A0A0D3A679_BRAOL; Uncharacterized protein
STRINGBo1g039870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.18e-92DNA-binding storekeeper protein-related transcriptional regulator