PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | E2F/DP | ||||||||
Protein Properties | Length: 293aa MW: 33277.9 Da PI: 8.328 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 75 | 7.5e-24 | 50 | 132 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 + +Lr+++ + +++k e+ +i+t++eva+e++s+ ++kn+rRR+YD+lNV++al++i++ +k+eirwkg XP_013609001.1 50 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnsekplndneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 132 6799999999...****9999********************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 1.1E-98 | 7 | 291 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 4.3E-36 | 45 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.3E-29 | 48 | 132 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.36E-18 | 51 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 7.6E-20 | 51 | 132 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 4.95E-30 | 139 | 240 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 5.75E-36 | 139 | 281 | No hit | No description |
SMART | SM01138 | 1.4E-47 | 139 | 293 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 9.6E-33 | 140 | 257 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MEMDLFVTPE KQRNHPPSVS LGKTPVRRKL IVDDDNEVVS EKKGQSRTSG GGLRQFSVMV 60 CQKLEAKKIT TYKEVADEII SDFATIKQNS EKPLNDNEYN EKNIRRRVYD ALNVFMALDI 120 IARDKKEIRW KGLPITCKKD VEEVKMDRNK IMNSVQKKAA FLKELREKVS SLESLMSRNK 180 EMVVKTEGPA EGFTLPFILL ETNPHAVVEI EISEDMQLVH LDFNNTPFSV HDDAYILKLM 240 QEHKQQQQQQ QQKRVSSPSS THQHSSAHSS SSSCIASGTS GPVCWNSGSI DTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 9e-27 | 42 | 134 | 3 | 90 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Low expression at the G1/S transition and increases during the S phase. S/G2 transitions. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in the actively dividing tissues of the shoot apical meristem, young leaf primordia, the vascular tissues of the maturing leaf primordia and axillary buds. {ECO:0000269|PubMed:11889041}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ294531 | 0.0 | AJ294531.1 Arabidopsis thaliana mRNA for DP-like protein (dpa gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609001.1 | 0.0 | PREDICTED: transcription factor-like protein DPA | ||||
Swissprot | Q9FNY3 | 0.0 | DPA_ARATH; Transcription factor-like protein DPA | ||||
TrEMBL | A0A0D3EIB7 | 0.0 | A0A0D3EIB7_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g183580.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11641 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02470.3 | 1e-173 | Transcription factor DP |