PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608781.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 376aa    MW: 41655.6 Da    PI: 8.0794
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH216.1e-07100123326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      e C+ f+ +G C++Gd C FaHg
  XP_013608781.1 100 GEVCPEFRNGGDCSRGDMCGFAHG 123
                     589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-596127IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-497124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.77998125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-699125IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4101123IPR000571Zinc finger, CCCH-type
SMARTSM003563133156IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDVEHHNSGH IGRPTVDIPP RKLLSSAISP SSPCPEDKVQ KECCYDSDSD DPYAGDHFRM  60
YEFKIRRCTR SRSHDWTDCP FAHPGEKARR RDPRRYHYTG EVCPEFRNGG DCSRGDMCGF  120
AHGVFECWLH PSRYRTEACK DGKHCKRKIC FFAHSPRQFR VLPPSENFVS GGGGSAASSP  180
ASVLSNKNNR CCMFCSHSPT STLLDLSRSP TSSPPLSPAN KSAVFSRMSR RHSAVAHKQV  240
LHELINSLDS FSFKEALAAS SSSPVIMPVT TGETMLASSN ISNHHRLPPW IDVGDRDLQL  300
QQSSFKYAFS PSSTPSYLNG QLPPPSFLRD EFTPRGGRLS DFTVAATAAA EARDKNSFEV  360
GHSGDLDLGW VNDLLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608781.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
SwissprotQ9FKW21e-179C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A0D3E6F30.0A0A0D3E6F3_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QGN20.0A0A3N6QGN2_BRACR; Uncharacterized protein
STRINGBo9g059770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-175C3H family protein