PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013608759.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 312aa MW: 35032.7 Da PI: 7.03 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.2 | 1.5e-27 | 120 | 181 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g++fpr+Y+rCt++ gC+++k+v+rs+edp ++ei+Y+g H ++ XP_013608759.1 120 LDDGFSWRKYGQKDILGAKFPRGYHRCTYRkaqGCEATKQVQRSNEDPMLFEIIYRGIHSCS 181 59***************************98999*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-25 | 117 | 182 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-24 | 119 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-39 | 120 | 182 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.954 | 120 | 179 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-24 | 121 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MERNSNGREW EKMKKELNEL MTEGRDYAHQ LKSQLGSTSS QESREHLAKK ILESYHKSLT 60 IMNYSGELDQ VSPHSHGTGS PKSDDSDHQE PHIIQSSKKS MPRWTRKVRI APGVVIDRAL 120 DDGFSWRKYG QKDILGAKFP RGYHRCTYRK AQGCEATKQV QRSNEDPMLF EIIYRGIHSC 180 SQASNVGSII PVQVLEPNQT QEQENLEIVK ASLDTGHHNY NHQAHLHQTL NYPLPSTLNL 240 ESNNVMLQEK DHNIGFLGST SYSDANYNFL ASHDAGSASH STSNSPSTVG LESPFENFGP 300 SHPFGGFGGF YS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-19 | 114 | 178 | 8 | 74 | Disease resistance protein RRS1 |
5w3x_D | 3e-19 | 114 | 178 | 8 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013608759.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430047 | 0.0 | KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608759.1 | 0.0 | PREDICTED: probable WRKY transcription factor 30 | ||||
Swissprot | Q9FL62 | 1e-150 | WRK30_ARATH; Probable WRKY transcription factor 30 | ||||
TrEMBL | A0A0D3E1H5 | 0.0 | A0A0D3E1H5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EA37 | 0.0 | A0A3P6EA37_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g013780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12595 | 19 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 1e-144 | WRKY DNA-binding protein 30 |
Publications ? help Back to Top | |||
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