PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013608424.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 262aa MW: 28122.4 Da PI: 6.5015

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013608424.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.7e-05	151	190	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_013608424.1 151 VRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 190 67788999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.947	140	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-11	146	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.98E-4	149	194	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-7	150	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGDSREDQED RAMMETGVSS FSELLMLSGG VLSSSDHHLN DIGADGGEDS FGFVFSGSTG 60 SRMLCFSGDC QNDDESLFLQ PSLLSGVSVS DPSCTTNICK NSNDACADNK STKSSTKRIG 120 SVNRQTMDHN RKPSKKCKQN QEKSSVGTAK VRKERLGERI AALQQLVSPY GKTDAASVLH 180 EAMGYIKFLQ DQIQVLCSPY LINYSLDGGV VTGDVRAGKK VRDLRSRGLC LVPVSSTVLL 240 ESSNGADFWS PATMGHTTSS SH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013608424.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608424.1	0.0	PREDICTED: transcription factor bHLH113-like isoform X2
Swissprot	Q9LT67	1e-140	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A0D3ACB1	0.0	A0A0D3ACB1_BRAOL; Uncharacterized protein
STRING	Bo1g114650.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-123	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]