PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013608279.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 296aa MW: 34394 Da PI: 8.1903

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013608279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.8	9.1e-16	11	53	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ri n+ r +t+ kRr+ + KKA E S+LC+++ ++i+++ t XP_013608279.1 11 RITNDKTRMTTYKKRRACLYKKAGEFSTLCGVQTCIILYGATK 53 89*************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.8E-10	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-7	4	24	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.17E-20	5	82	No hit	No description
PROSITE profile	PS50066	14.073	7	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-16	7	89	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-15	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-7	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-7	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MAHEKVVDLQ RITNDKTRMT TYKKRRACLY KKAGEFSTLC GVQTCIILYG ATKATDEVIS 60 KPEIWPEDET KARDIIRRYR DTVSNSCRKE AHVETFVNDK GKAKETENTN NNNKRGMNNK 120 NKYCCWEERL EKCSQEQLRG IFDDVGNKLH EAIMRQNRNA ITAQHQVMEP QTPQNLMDPY 180 YVSQYFAGHQ QQQCLMFPYN NMSFPLFSPH DDQIPMEPIL VENFADSGVN QGFMMSKGNE 240 STQFMQRQAP YYIEPVVQRP ASFNVNPFTG YQVPYNIPRL PGNQAEVWDF MAKKPI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013608279.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608279.1	0.0	PREDICTED: agamous-like MADS-box protein AGL86
Swissprot	Q9FIM0	1e-122	AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBL	A0A0D3ECK3	0.0	A0A0D3ECK3_BRAOL; Uncharacterized protein
STRING	Bo9g135720.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	1e-118	AGAMOUS-like 82

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]