PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608221.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 325aa    MW: 37655.4 Da    PI: 6.6978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.91.8e-101913311128
             NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104
                     de ++ +yLk+ +++     +++ +++d+++ +P++       + +++ f + + ++++ gk      + g W+   +dk + ++ +g+l g kk
  XP_013608221.1  19 DELILLRYLKPMIDDGASWPQHFAEDADVFNKNPSTVF-----NPENTVFLIVKPRTETCGKTDG--CEYGSWRIMARDKLIRNEeTGKLLGFKK 106
                     5556789*******9996666779999*********95.....4456677788878777665544..4689***********99878889***** PP

             NAM 105 tLvfy.kgrapkge..ktdWvmheyrl 128
                     +L f  k+++ +g+  k +Wvm+eyrl
  XP_013608221.1 107 ILKFCvKKTKTRGReyKRSWVMEEYRL 133
                     ****96334444444499*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.0119148IPR003441NAC domain
PfamPF023651.1E-619133IPR003441NAC domain
SuperFamilySSF1019412.48E-1919146IPR003441NAC domain
PROSITE profilePS5100515.473174323IPR003441NAC domain
SuperFamilySSF1019412.75E-20176321IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAAAGDYLGI RDELMGAGDE LILLRYLKPM IDDGASWPQH FAEDADVFNK NPSTVFNPEN  60
TVFLIVKPRT ETCGKTDGCE YGSWRIMARD KLIRNEETGK LLGFKKILKF CVKKTKTRGR  120
EYKRSWVMEE YRLPNPKQDH VICKIRLLFQ TEIGFLLFKH FSYSCGPLPA KQSLPAYGYG  180
FPNPEDEGAY YLQSLIDHEN EWPSYVTNDV YCMHPSALVD PHRDQMFARF GLCIFANRTE  240
ACGYTDGCES GCWRIMEGDK PISSIMVGEM FGYRRVFKFC EKDIDKHLGK VDGEVMFLTW  300
IMEEYRLAEE EMKDKVLCVI KLHRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608221.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608221.10.0PREDICTED: uncharacterized protein LOC106314976
TrEMBLA0A0D3EBL50.0A0A0D3EBL5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DZ180.0A0A3P6DZ18_BRAOL; Uncharacterized protein
STRINGBo9g123430.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.11e-113NAC domain containing protein 23