PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013607581.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 269aa MW: 31308.4 Da PI: 5.2472

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013607581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	73.2	3.4e-23	143	186	6	49
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 s ed++ yF++pi++AAkeLgv+lT+LKr+CR++G +RWPhRk+ XP_013607581.1 143 SREDMKPYFKMPITKAAKELGVGLTLLKRRCRELGFSRWPHRKL 186 789****************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.063	124	210	IPR003035	RWP-RK domain
Pfam	PF02042	9.8E-20	143	186	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MVDHEHLWSW SESNDYESSF LQEENLFSLL DQSLSFDYNS FINPFNGLQN ETWFSLQDSI 60 NLDPISTCFP AVDHMSMASV DFEAFSTLSQ DVFGELWNEN ACNFNNHVEP EMEIILHDGN 120 NTTKETTMQK RRYIGDRLIQ IFSREDMKPY FKMPITKAAK ELGVGLTLLK RRCRELGFSR 180 WPHRKLITSI DGLINNLKDH LEKMEGEVNK SKLMNALEIL EAEKKMIEEF PDLEFGDKTK 240 RLRQACFKAN YKRRRLVSSS SMSTTSSIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	255	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013607581.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607581.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein RKD3
Swissprot	Q9FGD1	2e-91	RKD3_ARATH; Protein RKD3
TrEMBL	A0A3P6DQ65	0.0	A0A3P6DQ65_BRAOL; Uncharacterized protein
STRING	Bo9g020450.1	1e-175	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-86	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]