PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607581.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 269aa    MW: 31308.4 Da    PI: 5.2472
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607581.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK73.23.4e-23143186649
          RWP-RK   6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 
                     s ed++ yF++pi++AAkeLgv+lT+LKr+CR++G +RWPhRk+
  XP_013607581.1 143 SREDMKPYFKMPITKAAKELGVGLTLLKRRCRELGFSRWPHRKL 186
                     789****************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.063124210IPR003035RWP-RK domain
PfamPF020429.8E-20143186IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVDHEHLWSW SESNDYESSF LQEENLFSLL DQSLSFDYNS FINPFNGLQN ETWFSLQDSI  60
NLDPISTCFP AVDHMSMASV DFEAFSTLSQ DVFGELWNEN ACNFNNHVEP EMEIILHDGN  120
NTTKETTMQK RRYIGDRLIQ IFSREDMKPY FKMPITKAAK ELGVGLTLLK RRCRELGFSR  180
WPHRKLITSI DGLINNLKDH LEKMEGEVNK SKLMNALEIL EAEKKMIEEF PDLEFGDKTK  240
RLRQACFKAN YKRRRLVSSS SMSTTSSIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251255KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607581.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607581.10.0PREDICTED: LOW QUALITY PROTEIN: protein RKD3
SwissprotQ9FGD12e-91RKD3_ARATH; Protein RKD3
TrEMBLA0A3P6DQ650.0A0A3P6DQ65_BRAOL; Uncharacterized protein
STRINGBo9g020450.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121801932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.12e-86RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]