PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 274aa MW: 29032.2 Da PI: 5.9752 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.4 | 1.1e-37 | 53 | 137 | 2 | 85 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+ +++tg+++ +as+ +a+s ++s++ XP_013607477.1 53 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSLIAATGSGTVPASALaSAASAVVSNQGG 137 789******************************************************************8888777777776643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-30 | 58 | 138 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.877 | 59 | 113 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MDPKNPNPHQ VPNFLIPPPQ PRDASDDNKE VNDFQIVVAS DKEPNSNGKK QLAPKRSSNK 60 DRHTKVEGRG RRIRMPALCA ARIFQLTREL GHKSDGETIQ WLLQQAEPSL IAATGSGTVP 120 ASALASAASA VVSNQGGSLT AGLMISHHDL DCGGGSSSGR PSWGEGGGEV WPNGAGYRIG 180 FPGFDFPGGA MSFASIFGAS GGGNGNQMLG LELGLSQVGN VGVLNQQIYQ QMAQAQAQAQ 240 GRVLHHTLHH NPGHEEDDDD DIYMLIETSE LISI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607477.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607477.1 | 0.0 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 1e-97 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0D3E0F6 | 0.0 | A0A0D3E0F6_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g008110.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 3e-73 | TCP family protein |