PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 26443.3 Da PI: 9.0207 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 54 | 103 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr+++ +g+++AeIrdps+ng +r +lg++ t+eeAa a+++a+ k++g XP_013607436.1 54 YKGVRRRP-WGKYAAEIRDPSKNG--TRMWLGTYETPEEAAVAYDQAAFKMRG 103 9*******.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.3E-38 | 53 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-32 | 53 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.052 | 53 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-23 | 53 | 112 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.09E-30 | 54 | 113 | No hit | No description |
Pfam | PF00847 | 3.7E-14 | 54 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-13 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-13 | 93 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.90.45.10 | 3.3E-11 | 141 | 231 | IPR023635 | Peptide deformylase |
SuperFamily | SSF56420 | 3.27E-10 | 142 | 231 | IPR023635 | Peptide deformylase |
Pfam | PF01327 | 6.6E-8 | 143 | 229 | IPR023635 | Peptide deformylase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEGELSWDNG SAVLDWIRRQ LLEDDDIDLT ASRSLATDSS SSSSSVPPRR GATYKGVRRR 60 PWGKYAAEIR DPSKNGTRMW LGTYETPEEA AVAYDQAAFK MRGSKAMLNF PHLISSAQEA 120 QAVKVSNCES GFRQLGIQLL PEEIGSERIQ KIIDDMVKVM RLAPGVGLGL AAPQIGVPLR 180 ASSWSSSFER GMIKPVFVVM IQIIVLEEET SAQNRRLFDL MVMVNPELKA SNLGKQGKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-30 | 50 | 118 | 2 | 70 | ATERF1 |
3gcc_A | 4e-30 | 50 | 118 | 2 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607436.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607436.1 | 1e-175 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
TrEMBL | A0A0D3DZJ3 | 1e-129 | A0A0D3DZJ3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DX05 | 1e-133 | A0A3P6DX05_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g001020.1 | 1e-130 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-36 | ethylene-responsive element binding factor 13 |