PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013607087.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HRT-like

Protein Properties

Length: 485aa MW: 54498.1 Da PI: 9.7174

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013607087.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.6	1.9e-17	276	306	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil++G C+r+PvkgRKRCeeHKG+R+ XP_013607087.1 276 VCGVILGNGGRCNRSPVKGRKRCEEHKGQRV 306 7*****************************7 PP
2	HRT-like	49.7	6.2e-16	335	364	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGvil + +C++ Pv+gRKRCe HKGmRi XP_013607087.1 335 CGVILPNMEPCSKRPVPGRKRCEDHKGMRI 364 *****************************7 PP
3	HRT-like	27	7.9e-09	405	431	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C ++++ G +C+r+ kg KRC++HK XP_013607087.1 405 CEATTKSGVPCTRSSPKGSKRCWQHKE 431 99************************7 PP
4	HRT-like	59.4	5.6e-19	451	481	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ ++G vC+r+PvkgRKRCeeHKGmR+ XP_013607087.1 451 ICGVKVSNGLVCERSPVKGRKRCEEHKGMRV 481 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MNFGDGNFFA VVSTVYKRED YKRTKHDAVF SKWKVLIGSN DWEDFKNGKD GVARYRVQNL 60 PRRSCPGLYE LGVVVIGHDQ ARKLDSDDVL AAYLGQAERS RLQSYGRSGA HLRNVSNNNL 120 NHCEAIESPD KKAVTTGLFE DIFIKDGSVL YRWAPMGSKR EAEATEGMLL STFDYAWNKG 180 SNGERRQLDL LMKLGDREFT RSRKSGISRV MFPFLRNQVG IRIKGEKHVL EEERKLSSDV 240 VEEKKKSFGF LASIIKLSQS RPQPVSDKLD EIDGSVCGVI LGNGGRCNRS PVKGRKRCEE 300 HKGQRVCRVS PVKNPPQPEI FAGQDYKHED SDVACGVILP NMEPCSKRPV PGRKRCEDHK 360 GMRINAFLFL LNRTDRERTV KTEKPDPESP TCNIVEEEEA LSRFCEATTK SGVPCTRSSP 420 KGSKRCWQHK EKTSGDSLPV KVHPVAGTQV ICGVKVSNGL VCERSPVKGR KRCEEHKGMR 480 VIIPS

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MNFGDGNFFA VVSTVYKRED YKRTKHDAVF SKWKVLIGSN DWEDFKNGKD GVARYRVQNL  60
PRRSCPGLYE LGVVVIGHDQ ARKLDSDDVL AAYLGQAERS RLQSYGRSGA HLRNVSNNNL  120
NHCEAIESPD KKAVTTGLFE DIFIKDGSVL YRWAPMGSKR EAEATEGMLL STFDYAWNKG  180
SNGERRQLDL LMKLGDREFT RSRKSGISRV MFPFLRNQVG IRIKGEKHVL EEERKLSSDV  240
VEEKKKSFGF LASIIKLSQS RPQPVSDKLD EIDGSVCGVI LGNGGRCNRS PVKGRKRCEE  300
HKGQRVCRVS PVKNPPQPEI FAGQDYKHED SDVACGVILP NMEPCSKRPV PGRKRCEDHK  360
GMRINAFLFL LNRTDRERTV KTEKPDPESP TCNIVEEEEA LSRFCEATTK SGVPCTRSSP  420
KGSKRCWQHK EKTSGDSLPV KVHPVAGTQV ICGVKVSNGL VCERSPVKGR KRCEEHKGMR  480
VIIPS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During embryogenesis, expressed in the embryo at the late torpedo/cotyledon stage, at the onset of maturation. Not expressed during early stages of seed development or in mature seeds. {ECO:0000269\|PubMed:22226340}.
Uniprot	TISSUE SPECIFICITY: Expressed in vascular tissues of stems, hypocotyls, leaves and flowers. Expressed in the vascular bundles of xylem in shoot parenchyma cells. Expressed in the remnant cytoplasm of differentiated fiber cells and in protoxylem element of parenchymal cells. {ECO:0000269\|PubMed:17991462}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269\|PubMed:17991462, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013607087.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607087.1	0.0	PREDICTED: uncharacterized protein LOC106313735
Swissprot	F4K933	0.0	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A0D3EBV3	0.0	A0A0D3EBV3_BRAOL; Uncharacterized protein
STRING	Bo9g126290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	0.0	effector of transcription2