PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013606820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 368aa MW: 41222.7 Da PI: 6.1438 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.3 | 7.4e-33 | 186 | 240 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l+k +gLt++hvkSHLQkYR+ XP_013606820.1 186 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLKNPGLTIYHVKSHLQKYRT 240 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.832 | 183 | 243 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.73E-17 | 184 | 240 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-30 | 184 | 242 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-23 | 186 | 240 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-10 | 188 | 239 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.3E-20 | 274 | 320 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MNNPVPCHVD NSGGGYLFSS SSGYCNVSAV SARGRTSQTH PPVSTMPSDR LAMQSSLINN 60 HQPQEFSDPL DEFFDFSDHV SAPNPQEDGS GVKLVSSLEL REKSEWQTWA DQLMSVDNGS 120 EPNWSELLGE PSPHNPNSQV PQRSHDLQQI LTPPRQEVIA NQQHQAVSSE EQLSGRNSSA 180 SGATSKQRMR WTPELHEAFV EAVNQLGGSE RATPKAVLKL LKNPGLTIYH VKSHLQKYRT 240 ARYKPETSEA TGETQEKKIT SIEDIKSLDM KTSVEITQAL RLQMEVQKRL HEQLEIQRYL 300 QLQIEKQGRQ LQMMFEKQQK LQENKSSSSE LSPKQCNGTS AEVEFGLEAQ AVNQTEPASS 360 SRKRTRED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-28 | 186 | 244 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-28 | 186 | 244 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-28 | 186 | 244 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-28 | 186 | 244 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-28 | 186 | 244 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-28 | 186 | 244 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-28 | 186 | 244 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-28 | 186 | 244 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013606820.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045943 | 0.0 | AY045943.1 Arabidopsis thaliana unknown protein (At5g29000) mRNA, partial cds. | |||
GenBank | AY085154 | 0.0 | AY085154.1 Arabidopsis thaliana clone 13378 mRNA, complete sequence. | |||
GenBank | BT002344 | 0.0 | BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606816.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X1 | ||||
Refseq | XP_013606818.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X3 | ||||
Refseq | XP_013606819.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X3 | ||||
Refseq | XP_013606820.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X3 | ||||
Refseq | XP_013606821.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X3 | ||||
Refseq | XP_013606822.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X3 | ||||
Swissprot | Q8GUN5 | 0.0 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A0D3E104 | 0.0 | A0A0D3E104_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g010090.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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