PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013605983.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 392aa MW: 41170.1 Da PI: 6.5124

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013605983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.7	1.7e-41	50	216	3	135
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ XP_013605983.1 50 VTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPpsksvply 144 679*****************************************************************999888888888886666677778899 PP TCP 89 ...........................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 ++ + +++++q++a++ ++ es +++r r+ ++++e+ k++ XP_013605983.1 145 galglthhqyeeqggafgahtppllgfHHHLQ--QQHHQQAPAETIPGPDGESFSRKRYRSVDSSKEDGEGKQN 216 99999988888899999988887654422222..3334444444445555566666666666666665555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.5E-41	54	210	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	55	109	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MDLSDDGVAA RGGSRHLVDP SLSIVPRSTP QEDPTTSSTA AAAATTSGVV TKRSTKDRHT 60 KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIVAAT GTGTIPANFS 120 SLSVSLRSSG STLSAPPSKS VPLYGALGLT HHQYEEQGGA FGAHTPPLLG FHHHLQQQHH 180 QQAPAETIPG PDGESFSRKR YRSVDSSKED GEGKQNENKS LKESEPPAAA TGAPMWAVAP 240 TNRSAGGNTF WMLPVPTTTA GNQPAAMESS SNANRAHMWP FGGGGAGAGG GGATHFMAGT 300 GFSFPMDQYR GSPLQLGSFL AQPQQPNQNI GLSLPDSNLG VLAALNAAYP RGGNANAEQV 360 NNAVEHQEKQ QQQAQQSDQD DDSRDENSNS DG

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MDLSDDGVAA RGGSRHLVDP SLSIVPRSTP QEDPTTSSTA AAAATTSGVV TKRSTKDRHT  60
KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIVAAT GTGTIPANFS  120
SLSVSLRSSG STLSAPPSKS VPLYGALGLT HHQYEEQGGA FGAHTPPLLG FHHHLQQQHH  180
QQAPAETIPG PDGESFSRKR YRSVDSSKED GEGKQNENKS LKESEPPAAA TGAPMWAVAP  240
TNRSAGGNTF WMLPVPTTTA GNQPAAMESS SNANRAHMWP FGGGGAGAGG GGATHFMAGT  300
GFSFPMDQYR GSPLQLGSFL AQPQQPNQNI GLSLPDSNLG VLAALNAAYP RGGNANAEQV  360
NNAVEHQEKQ QQQAQQSDQD DDSRDENSNS DG

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013605983.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013605983.1	0.0	PREDICTED: transcription factor TCP8
Swissprot	Q9C518	1e-177	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A0D3E5N0	0.0	A0A0D3E5N0_BRAOL; Uncharacterized protein
STRING	Bo9g052090.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-154	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]