 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_013605871.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 301aa MW: 34031.4 Da PI: 10.0921 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013605871.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 354.2 | 2.8e-108 | 1 | 301 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyye............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83
mdd g+r+ g+++ + ++ ++ +q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+a
XP_013605871.1 1 MDDGGHRD--NGWHKashgkqwmmqqhQ-PQQHQPSMKQVMSIIAERDAAIQERNLAISEKKAALAERDMAFLQRDTAIAERNNAIMERDSALAA 92
77777744..444444455666665431.344444556********************************************************* PP
GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178
l++++ s++++ ++ +i+ +qq++ q++++a+e+re+e++ +p++ ++ + +++k + a+k k+++k+kk++e++ k
XP_013605871.1 93 LQFRDSSMSTSR-------QHQPHIH-HQQHHMLQVTENAYETRETETSPPPPTKPKRGRKAKEPKAP--A-ANKRGPKTQRKVKKENEDDLTKL 176
***998854433.......3444555.4444669*************888888655554444444433..2.22233334456666666776777 PP
GAGA_bind 179 kkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
+++ + sk++++s++ +ln v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++grKmS++af+klL++L
XP_013605871.1 177 MFDEEATGSKSDWRSQETvGLNRVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKMSGSAFSKLLSRL 271
77776689*******99659*************************************************************************** PP
GAGA_bind 273 aaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
aaeG +dlsnpvDLkdhWAkHGtn+++ti+
XP_013605871.1 272 AAEGhHDLSNPVDLKDHWAKHGTNRYITIK 301
****88***********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MDDGGHRDNG WHKASHGKQW MMQQHQPQQH QPSMKQVMSI IAERDAAIQE RNLAISEKKA 60
ALAERDMAFL QRDTAIAERN NAIMERDSAL AALQFRDSSM STSRQHQPHI HHQQHHMLQV 120
TENAYETRET ETSPPPPTKP KRGRKAKEPK APAANKRGPK TQRKVKKENE DDLTKLMFDE 180
EATGSKSDWR SQETVGLNRV VYDETTMPPP VCSCTGVLRQ CYKWGNGGWQ SSCCTTTLSM 240
HPLPALPNKK HARVGGRKMS GSAFSKLLSR LAAEGHHDLS NPVDLKDHWA KHGTNRYITI 300
K
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
