PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013605870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 301aa MW: 34031.4 Da PI: 10.0921 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 354.2 | 2.8e-108 | 1 | 301 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyye............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 mdd g+r+ g+++ + ++ ++ +q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+a XP_013605870.1 1 MDDGGHRD--NGWHKashgkqwmmqqhQ-PQQHQPSMKQVMSIIAERDAAIQERNLAISEKKAALAERDMAFLQRDTAIAERNNAIMERDSALAA 92 77777744..444444455666665431.344444556********************************************************* PP GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178 l++++ s++++ ++ +i+ +qq++ q++++a+e+re+e++ +p++ ++ + +++k + a+k k+++k+kk++e++ k XP_013605870.1 93 LQFRDSSMSTSR-------QHQPHIH-HQQHHMLQVTENAYETRETETSPPPPTKPKRGRKAKEPKAP--A-ANKRGPKTQRKVKKENEDDLTKL 176 ***998854433.......3444555.4444669*************888888655554444444433..2.22233334456666666776777 PP GAGA_bind 179 kkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272 +++ + sk++++s++ +ln v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++grKmS++af+klL++L XP_013605870.1 177 MFDEEATGSKSDWRSQETvGLNRVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKMSGSAFSKLLSRL 271 77776689*******99659*************************************************************************** PP GAGA_bind 273 aaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301 aaeG +dlsnpvDLkdhWAkHGtn+++ti+ XP_013605870.1 272 AAEGhHDLSNPVDLKDHWAKHGTNRYITIK 301 ****88***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.0E-137 | 1 | 301 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 3.1E-101 | 1 | 301 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDDGGHRDNG WHKASHGKQW MMQQHQPQQH QPSMKQVMSI IAERDAAIQE RNLAISEKKA 60 ALAERDMAFL QRDTAIAERN NAIMERDSAL AALQFRDSSM STSRQHQPHI HHQQHHMLQV 120 TENAYETRET ETSPPPPTKP KRGRKAKEPK APAANKRGPK TQRKVKKENE DDLTKLMFDE 180 EATGSKSDWR SQETVGLNRV VYDETTMPPP VCSCTGVLRQ CYKWGNGGWQ SSCCTTTLSM 240 HPLPALPNKK HARVGGRKMS GSAFSKLLSR LAAEGHHDLS NPVDLKDHWA KHGTNRYITI 300 K |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013605870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605870.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
Refseq | XP_013605871.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
Refseq | XP_013605872.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
Refseq | XP_013605873.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
Refseq | XP_013605874.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
Refseq | XP_013712022.1 | 0.0 | protein BASIC PENTACYSTEINE6 isoform X1 | ||||
Refseq | XP_013712023.1 | 0.0 | protein BASIC PENTACYSTEINE6 isoform X1 | ||||
Refseq | XP_013712024.1 | 0.0 | protein BASIC PENTACYSTEINE6 isoform X1 | ||||
Refseq | XP_022563820.1 | 0.0 | protein BASIC PENTACYSTEINE6 isoform X1 | ||||
Swissprot | Q8L999 | 1e-162 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A3P6GPU2 | 0.0 | A0A3P6GPU2_BRAOL; Uncharacterized protein | ||||
STRING | Bra007518.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6169 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.2 | 1e-138 | basic pentacysteine 6 |