PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013605678.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 509aa MW: 57053.3 Da PI: 6.4056

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013605678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.3	3.8e-29	225	284	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+H h+ XP_013605678.1 225 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHSHP 284 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-30	210	286	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-26	218	286	IPR003657	WRKY domain
PROSITE profile	PS50811	27.76	220	286	IPR003657	WRKY domain
SMART	SM00774	2.7E-34	225	285	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	226	284	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MEKEEFLRSG HGREERNEEM RKLDSDQEHD HIIRSKLDSI KVEMEEAKDE NRRLKSSLSR 60 TKKEFEILQT QYNQLMVIIH EDPNKFLPKE EDEDKERTSD REELVLLSLG RRLKSPVPSG 120 SMTNKEEKMK DFMKETDDDK RINEQGLSMG FEYKDLSNPS EKLEVDHNQE KTSLEVSNSN 180 KIQSENSFGF KNDGDEHEDE EEPLPQNIAK KTRVSVRARC ETPTMNDGCQ WRKYGQKIAK 240 GNPCPRAYYR CTIAPSCPVR KQVQRCSEDM SILISTYEGT HSHPLPMSAT AMASATSAAA 300 SMLLSRASSS SAADLHGINF SLSSNSITPK PLLQTSSGHP TVTLDLTTTS SSQQPFLSML 360 NRFSAPPSNV PRSNSYPSTN LSFSNNTNTL MNWGGGSNRN EQYRAPYGNT STHQQSPYQH 420 MIQTRAAGLS FDTFGRSSSS SPHPTQNSLD NVNFKNITHD QVQSLPAETI KAITTDPKFQ 480 SALATALSSI IGGDLKIDNV TRNEAEKSP

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MEKEEFLRSG HGREERNEEM RKLDSDQEHD HIIRSKLDSI KVEMEEAKDE NRRLKSSLSR  60
TKKEFEILQT QYNQLMVIIH EDPNKFLPKE EDEDKERTSD REELVLLSLG RRLKSPVPSG  120
SMTNKEEKMK DFMKETDDDK RINEQGLSMG FEYKDLSNPS EKLEVDHNQE KTSLEVSNSN  180
KIQSENSFGF KNDGDEHEDE EEPLPQNIAK KTRVSVRARC ETPTMNDGCQ WRKYGQKIAK  240
GNPCPRAYYR CTIAPSCPVR KQVQRCSEDM SILISTYEGT HSHPLPMSAT AMASATSAAA  300
SMLLSRASSS SAADLHGINF SLSSNSITPK PLLQTSSGHP TVTLDLTTTS SSQQPFLSML  360
NRFSAPPSNV PRSNSYPSTN LSFSNNTNTL MNWGGGSNRN EQYRAPYGNT STHQQSPYQH  420
MIQTRAAGLS FDTFGRSSSS SPHPTQNSLD NVNFKNITHD QVQSLPAETI KAITTDPKFQ  480
SALATALSSI IGGDLKIDNV TRNEAEKSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	212	286	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013605678.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430068	0.0	KF430068.1 Brassica rapa WRKY transcription factor 61 (WRKY61) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013605678.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A0D3DQA2	0.0	A0A0D3DQA2_BRAOL; Uncharacterized protein
STRING	Bo8g068160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]