PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605462.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 539aa    MW: 59055.7 Da    PI: 7.1255
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.3e-31212269260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  e+s+ d+++++i+Y+g+H+h+k
  XP_013605462.1 212 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFETSH-DGRITDIIYKGTHDHPK 269
                     8***************************************9.***************85 PP
2WRKY107.28e-34369427159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_013605462.1 369 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 427
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.905206270IPR003657WRKY domain
SuperFamilySSF1182902.62E-24209270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-26209270IPR003657WRKY domain
SMARTSM007747.3E-33211269IPR003657WRKY domain
PfamPF031061.6E-23212268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37354429IPR003657WRKY domain
SuperFamilySSF1182901.57E-29361429IPR003657WRKY domain
PROSITE profilePS5081138.629364429IPR003657WRKY domain
SMARTSM007743.1E-39369428IPR003657WRKY domain
PfamPF031064.3E-26370427IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDLPQANNDR EELQVDCSAT VDPTARHNSA GGGGGGGGGG ARYKLMSPAM LPISRSTTNI  60
TIPSGLSPTS FLESPVFISN IKPEPSPTTG SLFKPRPVHV SSSSYTGRAF HQNTFTEHKS  120
SEFEFRPPAS NMVYAELDKH KREPPVQFQG QGHGSSHSPE ATASSSEPSR PTPPVQTPPT  180
SSDIPAGSDQ EESVQTSQNE SRGSAPPTVL ADDGYNWRKY GQKHVKGSEF PRSYYKCTHP  240
NCEVKKLFET SHDGRITDII YKGTHDHPKP QPGRRNSGGV GMVAQEERVE KGVYNLSQAI  300
EQTGNPEVAS TTNDGGDVAA SNRNKDDPED DDPYTKRRRL DGNMEITPLV KPIREPRVVV  360
QTLSEVDILD DGYRWRKYGQ KVVRGNPNPR SYYKCTAPGC PVRKHVERAS HDPKAVITTY  420
EGKHNHDVPT SKSGSSNHHE IQPRFRPPEE TDTISLNLGV GISSNGPNEN QQLLSQTHPN  480
GVGFRFVHAA PVSTYYASMN QYGPRETQSE TQNDDISSLN HSSSYPYPHN NIGRIQTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38210429877Probable WRKY transcription factor 4
2lex_A8e-38210429877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335339KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605462.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123930.0EU912393.1 Brassica napus WRKY20-1 transcription factor (WRKY20-1) mRNA, complete cds.
GenBankKC2465700.0KC246570.1 Brassica napus WRKY transcription factor 20.1 (WRKY20.1) mRNA, complete cds.
GenBankKC2465710.0KC246571.1 Brassica napus WRKY transcription factor 20.2 (WRKY20.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605462.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D3DN130.0A0A0D3DN13_BRAOL; Uncharacterized protein
STRINGBo8g051360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein