PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605329.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28627.5 Da    PI: 8.9635
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.7e-1329701050
                    HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    ++++  R+++il KA ELS+LCd e++vi +   g+l ++++
  XP_013605329.1 29 STSLLMRQETILRKAGELSTLCDNEICVIHYDRVGNLvKTWP 70
                    689999*************************99987637886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.1521265IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.52E-1129106IPR002100Transcription factor, MADS-box
PfamPF003197.3E-73065IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDSSPSSSRN NKKVNKFSVR KQTLFKKPST SLLMRQETIL RKAGELSTLC DNEICVIHYD  60
RVGNLVKTWP EDESQVQVIA ERYSKLTHEE KQKKSTNLSK FCNKKMHDEK KRFPIKFSQK  120
VQELEGSLVS KLQLLQDILL REDQSFMSEQ NTTFLHSSCG FASKDSSSSS QLAVPDHQQQ  180
TEATSTEQDM SRGDVYNSAA ATHQRLCLGD KASTLALATT MSVLLYLRSK LTLDTTTTVS  240
TLGMTSTIFV HDVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605329.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728701e-131AC172870.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH004A06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605329.10.0PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLA0A0D3DT861e-147A0A0D3DT86_BRAOL; Uncharacterized protein
STRINGBo8g088400.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2153425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.14e-38AGAMOUS-like 89