PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605117.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 578aa    MW: 65383.7 Da    PI: 7.0083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605117.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.4e-141163248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     + W+t+E++ll++av+++G ++W+++a+++        ++t+ +c++++++++
   XP_013605117.1 11 QTWSTWEELLLACAVHRHGIDSWDSVAAEIHkqnsssRTLTASDCRHKYHDLK 63
                     78***********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.504563IPR017877Myb-like domain
SuperFamilySSF466891.17E-6866IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-5964IPR009057Homeodomain-like
SMARTSM007171.6E-8965IPR001005SANT/Myb domain
PfamPF002493.6E-131163IPR001005SANT/Myb domain
CDDcd001673.35E-61263No hitNo description
SMARTSM002974.9E-8244356IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.4E-12244356IPR001487Bromodomain
CDDcd043695.58E-13251351No hitNo description
SuperFamilySSF473703.53E-14254356IPR001487Bromodomain
PfamPF004391.2E-7259340IPR001487Bromodomain
PROSITE profilePS5001411.05263337IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MAKPENNENH QTWSTWEELL LACAVHRHGI DSWDSVAAEI HKQNSSSRTL TASDCRHKYH  60
DLKRRFSPGG DTVSEISGWL EELRKLRVDE LRREVERYDL SISSLQMKVK RLEDEREKSL  120
KEEAEKVTES PDLVKITETV NNSDVPVIEP NREIDESIEE KPNRIGGDET DEKPVREDSG  180
RGSCESVAKD SERGDSVREG KDSPELKLEE EVKETSDVQS SASLPRKEKP VGHDQPDNED  240
QSLAVNKTLV KSRPLIEFIE MLCSHPIGSH FSRRLESQLQ ETPEEYERII RQHIDFDLIR  300
TRVEEGYYES SKTKFHRDLL VLINNAKVFY GERSPDSNSA TQLHELIKKQ MTTLNTSNQT  360
SPTKDEPLVT SKEEELTLLS LKTEVSVSVK ACRKRSSLAV RSSEPFKKKT NIVPTTDENE  420
KKQVSETEEE DETTTDKDEE PIVPKKTPRG RTTTTSSSAK KIGTRNVVKT SLDDDQKKSD  480
QEKKGKTTAN AVSKKQSAAS FLKRMKGAET VLETVKDDSS SGKKGAEQRR SNTKHEKAVA  540
GQKRTTPAKK NTSAASKREA SEKEEGSSTR PKKRTRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605117.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3616285e-40AF361628.1 Arabidopsis thaliana AT3g57980/T10K17_190 mRNA, complete cds.
GenBankAL1329775e-40AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
GenBankAY1131655e-40AY113165.1 Arabidopsis thaliana AT3g57980/T10K17_190 mRNA, complete cds.
GenBankCP0026865e-40CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605117.10.0PREDICTED: uncharacterized protein LOC106312223 isoform X1
TrEMBLA0A0D3DU310.0A0A0D3DU31_BRAOL; Uncharacterized protein
STRINGBo8g092340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-168DNA-binding bromodomain-containing protein