PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013605032.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 627aa MW: 66091.6 Da PI: 10.333

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013605032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.1	6.3e-11	190	234	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++eEde l+ avk++G g+W tI+++ Rt q+ rw XP_013605032.1 190 RKKWSAEEDEELIAAVKRHGEGSWVTISKEEFeGERTVSQLSQRW 234 789*************************98666678888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.21	185	242	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-13	186	235	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.36E-11	187	240	IPR009057	Homeodomain-like
SMART	SM00717	8.8E-10	189	240	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-8	190	234	IPR001005	SANT/Myb domain
CDD	cd11660	1.90E-11	191	234	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MIDRKRKEFI SEEDMATLLQ RYDTMTILKL LQEMAYYAEP KMDWNEMLKK TSTGITNARD 60 YQLLWRHLAY RDSLLPVDDN ALPLDDDSDM ECELETSPAV NVDVVSEAVA HVKVIASSFV 120 PSDLDIPEDS TFEAPLTINI PYGHRGPQEP SDSYWSSKGM NITFPISLQK AAEGHNGNGL 180 ASSVAARKKR KKWSAEEDEE LIAAVKRHGE GSWVTISKEE FEGERTVSQL SQRWGFLRKR 240 GDTSNSSTQS GLHRTEEQMA ANRALSLAVG NRVPSKKAAV GIPPVRTSGT ITGAQANGAN 300 NGNSLQGQQQ SQPVVQATPR VATSIPTTKS RVPAKKTTAN STSRSALMVT ASFPRPSAIS 360 SALNAEPVKN ASPSATSFPR PSGISSALNA ERVKAASAAS FPRPSGISSA PNVVPVKTAS 420 AAILPRPLGV ISASKAEPFK TAPVAFLPRP SGTISAPNAE AVKAASAVSL PGPSSIISAS 480 KAEPVKSVAA AGPSNVRNAV TGSPRHVLSS SPMAPFSKGP TIQNNPSPGF ASSRLAPTQR 540 VPAANVIPQK PNAGAGVTAT CKPVGVQTQG NRANPMVTPT LQSNKAISTN SVITTAKPVA 600 AKVETPSLLP KHTQVPQTEV GSGTEKS

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MIDRKRKEFI SEEDMATLLQ RYDTMTILKL LQEMAYYAEP KMDWNEMLKK TSTGITNARD  60
YQLLWRHLAY RDSLLPVDDN ALPLDDDSDM ECELETSPAV NVDVVSEAVA HVKVIASSFV  120
PSDLDIPEDS TFEAPLTINI PYGHRGPQEP SDSYWSSKGM NITFPISLQK AAEGHNGNGL  180
ASSVAARKKR KKWSAEEDEE LIAAVKRHGE GSWVTISKEE FEGERTVSQL SQRWGFLRKR  240
GDTSNSSTQS GLHRTEEQMA ANRALSLAVG NRVPSKKAAV GIPPVRTSGT ITGAQANGAN  300
NGNSLQGQQQ SQPVVQATPR VATSIPTTKS RVPAKKTTAN STSRSALMVT ASFPRPSAIS  360
SALNAEPVKN ASPSATSFPR PSGISSALNA ERVKAASAAS FPRPSGISSA PNVVPVKTAS  420
AAILPRPLGV ISASKAEPFK TAPVAFLPRP SGTISAPNAE AVKAASAVSL PGPSSIISAS  480
KAEPVKSVAA AGPSNVRNAV TGSPRHVLSS SPMAPFSKGP TIQNNPSPGF ASSRLAPTQR  540
VPAANVIPQK PNAGAGVTAT CKPVGVQTQG NRANPMVTPT LQSNKAISTN SVITTAKPVA  600
AKVETPSLLP KHTQVPQTEV GSGTEKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	191	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013605032.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013605032.1	0.0	PREDICTED: cell wall protein AWA1 isoform X2
TrEMBL	A0A0D3AA18	0.0	A0A0D3AA18_BRAOL; Uncharacterized protein
STRING	Bo1g087910.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58220.1	0.0	MYB_related family protein