PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605022.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 659aa    MW: 69058 Da    PI: 10.3097
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.7e-11190234144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++eEde l+ avk++G g+W tI+++     Rt  q+  rw
   XP_013605022.1 190 RKKWSAEEDEELIAAVKRHGEGSWVTISKEEFeGERTVSQLSQRW 234
                      789*************************98666678888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.21185242IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-13186235IPR009057Homeodomain-like
SuperFamilySSF466891.44E-11187240IPR009057Homeodomain-like
SMARTSM007178.8E-10189240IPR001005SANT/Myb domain
PfamPF002493.5E-8190234IPR001005SANT/Myb domain
CDDcd116602.06E-11191234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MIDRKRKEFI SEEDMATLLQ RYDTMTILKL LQEMAYYAEP KMDWNEMLKK TSTGITNARD  60
YQLLWRHLAY RDSLLPVDDN ALPLDDDSDM ECELETSPAV NVDVVSEAVA HVKVIASSFV  120
PSDLDIPEDS TFEAPLTINI PYGHRGPQEP SDSYWSSKGM NITFPISLQK AAEGHNGNGL  180
ASSVAARKKR KKWSAEEDEE LIAAVKRHGE GSWVTISKEE FEGERTVSQL SQRWGFLRKR  240
GDTSNSSTQS GLHRTEEQMA ANRALSLAVG NRVPSKKAAV GIPPVRTSGT ITGAQANGAN  300
NGNSLQGQQQ SQPVVQATPR VATSIPTTKS RVPAKKTTAN STSRSALMVT ANSVAAAACM  360
SGLATTASVP KVEPVIKASP AAASFPRPSA ISSALNAEPV KNASPSATSF PRPSGISSAL  420
NAERVKAASA ASFPRPSGIS SAPNVVPVKT ASAAILPRPL GVISASKAEP FKTAPVAFLP  480
RPSGTISAPN AEAVKAASAV SLPGPSSIIS ASKAEPVKSV AAAGPSNVRN AVTGSPRHVL  540
SSSPMAPFSK GPTIQNNPSP GFASSRLAPT QRVPAANVIP QKPNAGAGVT ATCKPVGVQT  600
QGNRANPMVT PTLQSNKAIS TNSVITTAKP VAAKVETPSL LPKHTQVPQT EVGSGTEKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187191KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605022.10.0PREDICTED: cell wall protein AWA1 isoform X1
TrEMBLA0A0D3AA180.0A0A0D3AA18_BRAOL; Uncharacterized protein
STRINGBo1g087910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein