PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604997.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 416aa    MW: 45666.2 Da    PI: 7.0218
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.75.4e-28149202256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     ++++WtpeLH+rFv+aveqL G ekA+P++ilelm+v++Lt+++v+SHLQkYR++
  XP_013604997.1 149 KKVDWTPELHRRFVDAVEQL-GLEKAVPSRILELMGVHCLTRHNVASHLQKYRSH 202
                     5899****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.728145204IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-27146205IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-26149202IPR006447Myb domain, plants
SuperFamilySSF466892.15E-17149205IPR009057Homeodomain-like
PfamPF002491.3E-7151200IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLALSPARNS ARGGCFDGES EFLATSSDFT INPEENFPVF TDQGDLLDII DFDDLFGVAG  60
DVLPDLEIDP EILAGDFSAS SSSEKTDSQG ETNKKGISEE VVSKRDEDET AMSEKMANYV  120
DGDSNRKRKY SSSSGSSKNN SNEGKRKVKK VDWTPELHRR FVDAVEQLGL EKAVPSRILE  180
LMGVHCLTRH NVASHLQKYR SHRKHVLARE AEAANWTRKR HIYGLDSTGV NINGRNKNGW  240
IAPAPTIGYA PPPPAAVASP TIHHHHFRPL HVWGHPTVNQ SVIPHVFPKH LPPPSTAMAT  300
TPFWVSDNPY WPRVHNGTAP YFPTVATRFR APPVAGIPQA MPPHHTVYKP DHGYGGSRSL  360
VDLHPSKESV DAAIGDVLTR PWLPLPLGLK PPAFDGVMTE LHRHGVSEVP PTASCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-16153204657Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.47930.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette and cauline leaves. Expressed at low levels in cotyledons and shoots. {ECO:0000269|PubMed:12220263}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013604997.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525260.0AK352526.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604997.10.0PREDICTED: transcription activator GLK1-like isoform X1
SwissprotQ9SIV30.0GLK1_ARATH; Transcription activator GLK1
TrEMBLA0A0D3DWC90.0A0A0D3DWC9_BRAOL; Uncharacterized protein
STRINGBo8g102300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22092773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-176GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  2. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  3. Tokumaru M, et al.
    Ubiquitin-Proteasome Dependent Regulation of the GOLDEN2-LIKE 1 Transcription Factor in Response to Plastid Signals.
    Plant Physiol., 2017. 173(1): p. 524-535
    [PMID:27821720]
  4. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  5. Wang H,Seo JK,Gao S,Cui X,Jin H
    Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1.
    New Phytol., 2017. 215(3): p. 1144-1155
    [PMID:28656601]