PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013604806.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 647aa MW: 71828 Da PI: 6.0432 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91.9 | 6.7e-29 | 57 | 141 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r+em++++r++ lk+plWe+vs+k+ e g++r++k+Ckek+en++k++k++ke++++r++++ t+++f+qlea XP_013604806.1 57 RWPREETLALLRIRSEMDSTFRDATLKAPLWEHVSRKLLELGYKRNAKKCKEKFENVQKYHKRTKETRGGRHEGK--TYKFFSQLEA 141 8********************************************************************985555..6*******85 PP | |||||||
2 | trihelix | 103.7 | 1.3e-32 | 414 | 498 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+e+laLi++r+ me r++++ k+ lWee+s m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpy+++l+ XP_013604806.1 414 RWPKEEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYYHRLD 498 8*********************************************************************8.99999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.934 | 50 | 114 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.017 | 54 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 8.76E-25 | 56 | 121 | No hit | No description |
Pfam | PF13837 | 3.8E-19 | 56 | 142 | No hit | No description |
SMART | SM00717 | 0.0011 | 411 | 473 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.131 | 413 | 471 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-4 | 413 | 470 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 7.1E-22 | 413 | 498 | No hit | No description |
CDD | cd12203 | 3.50E-29 | 414 | 478 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MEQGGGGGGN EVVEEASPIS SRPPANMEEL MRFSAAADDG GGFGGGGGSS SSSSGNRWPR 60 EETLALLRIR SEMDSTFRDA TLKAPLWEHV SRKLLELGYK RNAKKCKEKF ENVQKYHKRT 120 KETRGGRHEG KTYKFFSQLE ALNTSTTPAP PSSLDVTPLS VANPVQQPSS SSSQFPVFSL 180 TQTPPPSQPL PPHTVSFTPN PLPPPPPPSV DPPFPGGTFS SHSSSTASGM GSDDDDDMDV 240 DQAGPSSHKR KRENRGTGGG KMMELFEGLV RQVMQKQAAM QRSFLEALEK REQERLAREE 300 AWKRQEMSRL AREHEIMAQE RAASASRDAA IISLIQKITG HTIQLPHSLS SQPSPPPPAA 360 KRPSSQAVEP PLSQPIMAIP QQQVLPPPPP HQPQQQQQQE MIMSSDQSLP SSSRWPKEEI 420 LALINLRSGM EPRYQDNVPK GLLWEEISTS MKRMGYNRNA KRCKEKWENI NKYYKKVKES 480 NKKRPQDAKT CPYYHRLDLL YSSKVLGSGA GSSTSSLPQD QISTIQKQSP VSAMKPSQEG 540 DVYVHQTHGS ASSEEEEPRE ETPQGAEKPE DLVMRELMQQ KQQQEEDSMI GEYEKIEASH 600 NYNMEEEEMD EELDDDEKSA AYEIAFQSPA NRGGNGHSEP PFLTMVQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 107 | KRNAKKCKE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in siliques, and, to a lower extent, in growing root hairs, leaves, stems, and flowers. Present in abaxial epidermal cells, predominantly in guard cells, pavement cells, and meristemoids. {ECO:0000269|PubMed:21169508, ECO:0000269|PubMed:9501260}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013604806.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013604806.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like isoform X1 | ||||
Swissprot | Q9C882 | 0.0 | GTL1_ARATH; Trihelix transcription factor GTL1 | ||||
TrEMBL | A0A0D3DKQ7 | 0.0 | A0A0D3DKQ7_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g027460.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6226 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 0.0 | GT-2-like 1 |
Publications ? help Back to Top | |||
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