PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013604104.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 259aa MW: 29272.6 Da PI: 10.3235 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.6 | 1.2e-21 | 63 | 105 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ ++ rqvtfskRr+g++KKA+EL++LC+ae+ +i++s+ k XP_013604104.1 63 IKKETHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVYSPAKK 105 8999***********************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.8E-31 | 53 | 112 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.29E-28 | 53 | 130 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.591 | 53 | 113 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.16E-34 | 54 | 129 | No hit | No description |
PRINTS | PR00404 | 2.0E-16 | 55 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-24 | 62 | 109 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 75 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 90 | 111 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
KLPTMKVDLV IMPHTHSNMY INKXFLHQIV QQLKATKTTP XKKTMMSKKK ESMGRQRIPM 60 VKIKKETHRQ VTFSKRRAGL FKKASELCTL CGAEIGIIVY SPAKKPFSFG HPSVESVLDR 120 YLSRNDLSLA QTKKPQGNTA GNCELNMLLT QTVSEVEEEK KKGQAMADVR KGNAARRLVR 180 NWWEGPVDEM NVVQLQVMKC ALEELRKIVV SETNTVPFKE VKEDVFGFLD TNKVTAPSYM 240 NTSSGLSNAY HFGYGNGCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-14 | 53 | 126 | 1 | 74 | MEF2C |
5f28_B | 1e-14 | 53 | 126 | 1 | 74 | MEF2C |
5f28_C | 1e-14 | 53 | 126 | 1 | 74 | MEF2C |
5f28_D | 1e-14 | 53 | 126 | 1 | 74 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269|PubMed:18713950}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013604104.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013604104.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL61, partial | ||||
Swissprot | Q4PSU4 | 1e-123 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A397Y7Y5 | 1e-169 | A0A397Y7Y5_BRACM; Uncharacterized protein | ||||
STRING | Bo8g099550.1 | 1e-161 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-121 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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