PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013604087.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23513.2 Da PI: 9.7956 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.9 | 2.4e-22 | 51 | 99 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++s+r+vtfskRr g++KKA ELSvL++a++av+ fs+ g++y + XP_013604087.1 51 KEIKEDSKRHVTFSKRRRGLFKKAAELSVLTGAKIAVVTFSKCGRIYSF 99 689********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.067 | 43 | 103 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-23 | 43 | 102 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.63E-22 | 44 | 114 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-17 | 45 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-21 | 53 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-17 | 65 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-17 | 80 | 101 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEEVRETLPT TFLKPNEQLQ IPNVLVTQTK KELTKPRNPK TSRGRLKIEI KEIKEDSKRH 60 VTFSKRRRGL FKKAAELSVL TGAKIAVVTF SKCGRIYSFG HVDSLMDKYL RKIPVNLDVY 120 SGGDSAEEGG RPWWERPVES VPEEELEEYI MAMSVLRDKL GKKINDMGSI VPEWPINMMG 180 WKPQMDMQSM GDVTDGVTRC RLGQNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 6e-14 | 36 | 100 | 9 | 73 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 6e-14 | 36 | 100 | 9 | 73 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013604087.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013604087.1 | 1e-151 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A0D3DWU6 | 1e-150 | A0A0D3DWU6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GQC4 | 1e-150 | A0A3P6GQC4_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g104960.1 | 1e-151 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17310.1 | 1e-72 | M-type_MADS family protein |