PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013603941.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 243aa MW: 26907.6 Da PI: 5.9281 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.1 | 3.5e-37 | 23 | 79 | 6 | 62 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ + XP_013603941.1 23 PSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRPK 79 58***************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-25 | 19 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.63 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-31 | 24 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 25 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MERTEALTSS FIWRPNANAE ITPSCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG 60 GSLRNVPVGG GCRKSRRPKS SSGNTKTGLT ANSYNSGGGS PNIDLALVYA NFLNPKPDEH 120 KLQENCDTDF LVDEPAGASM EPLWSMDIDH GHHHHHYEHQ VERIVEECGY NGLPPFPGEE 180 LMSIDTSGVW SDALLNGHNH VDVGGVTPAQ IVQDPVVHFS DESSDSTNLL FGSWSRFDFS 240 VDG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013603941.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603941.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.5-like | ||||
Swissprot | Q9SVC5 | 1e-147 | DOF35_ARATH; Dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A0D3DS58 | 0.0 | A0A0D3DS58_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g080660.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9141 | 22 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G52440.1 | 1e-144 | Dof family protein |