PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 197aa MW: 22719.3 Da PI: 6.9532 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.7e-30 | 105 | 163 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+++g++fpr+Y++C+ ++C vkkk+er++++p++v +tYeg+Hnh+ XP_013603824.1 105 LDDGYKWRKYGKKPIRGNPFPRHYHKCSNPNCIVKKKIERDTSNPEYVLTTYEGRHNHP 163 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-26 | 98 | 165 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.195 | 100 | 165 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-25 | 102 | 165 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-31 | 105 | 164 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-22 | 106 | 163 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MIYPSNINPD FTDFGETFKF DDYDDDAFQM IMEGISLGDH SPTLSWTSSE KLLATEVTSP 60 FQTSLATSPI SFEIGDKDEK KKRKRHKDDQ VIHVFKTKSV KEIALDDGYK WRKYGKKPIR 120 GNPFPRHYHK CSNPNCIVKK KIERDTSNPE YVLTTYEGRH NHPSPSVVYC DSDDFDLTSL 180 NTLSFQTRTY SYSHSAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-24 | 105 | 166 | 17 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-24 | 105 | 166 | 17 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603824.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593160 | 0.0 | KM593160.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY92) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603824.1 | 1e-146 | PREDICTED: probable WRKY transcription factor 59 | ||||
Swissprot | Q9SJ09 | 2e-87 | WRK59_ARATH; Probable WRKY transcription factor 59 | ||||
TrEMBL | A0A0D3DW45 | 1e-145 | A0A0D3DW45_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G0N9 | 1e-145 | A0A3P6G0N9_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g101460.1 | 1e-145 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13835 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21900.1 | 1e-78 | WRKY DNA-binding protein 59 |