PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603572.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 403aa    MW: 45819.9 Da    PI: 10.1733
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603572.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44e-1614961198
                    HHTT-EE--HHH.HTT.---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    + s+ l++p  f+++h +g +e  +t +l++  ++  +W+vk+  + ++    lt+GWkeF+ a++L++gD+v+F+ ++++ f  +v++f 
  XP_013603572.1 14 FHSH-LTIPVAFCSKHvEGRNEHMTTAKLRSdiSDDITWKVKI--EDGR---KLTDGWKEFALAHDLRVGDIVIFRQEKDMAF--HVTLFG 96
                    4555.************66667778999999656669******..4444...39**********************7776777..998875 PP
2B374.41.4e-23147232593
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      +++++l+ +rl+lpk+f++e+g++++++ +++l++e+grsW+++l  + + g++ +t+GWk+F++a gL++g  ++Fkl++r ++  +
  XP_013603572.1 147 NVRPSSLRDNRLTLPKRFVRENGLETRCG-EIVLMNEKGRSWNLNLARKDSCGTMSITGGWKSFCNASGLRAGSLFTFKLIKRGDT--L 232
                     56789999****************99887.****************77777777***************************98655..3 PP
3B356.26.1e-18304396498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +l++sdv + +rl +p +f++ hg++ke  +++ + d++g +W+  l+  + +++r+ l +GWkeF kan ++ g++++ kl+++ ++++v+ ++
  XP_013603572.1 304 TLKTSDVKN-SRLFIPVNFTRLHGINKE--TEMAMLDKNGVKWSTSLRSeTSGGDRIRLVGGWKEFFKANCVEIGESIIVKLIWEGDKSCVLEFY 395
                     455666665.57************9965..58***************885666666****************************98888887776 PP

                     - CS
              B3  98 r 98 
                     +
  XP_013603572.1 396 S 396
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.337398IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-184105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-225110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-15595No hitNo description
SMARTSM010198.6E-21698IPR003340B3 DNA binding domain
PfamPF023621.7E-111595IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-22140235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-20142235IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-29143239IPR003340B3 DNA binding domain
CDDcd100171.60E-21143235No hitNo description
PROSITE profilePS5086315.721143239IPR003340B3 DNA binding domain
PfamPF023621.1E-21147231IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17292391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-20296390IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-21300398IPR003340B3 DNA binding domain
PROSITE profilePS5086313.69300398IPR003340B3 DNA binding domain
PfamPF023621.8E-16300397IPR003340B3 DNA binding domain
CDDcd100171.27E-15300394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MVNQHFFQPL LPGFHSHLTI PVAFCSKHVE GRNEHMTTAK LRSDISDDIT WKVKIEDGRK  60
LTDGWKEFAL AHDLRVGDIV IFRQEKDMAF HVTLFGPSCC EIQYGSCLKK KNKLKLSKIQ  120
NKKKVKKKNK KKYVESSLLD PSCFVNNVRP SSLRDNRLTL PKRFVRENGL ETRCGEIVLM  180
NEKGRSWNLN LARKDSCGTM SITGGWKSFC NASGLRAGSL FTFKLIKRGD TLVLLKSPSS  240
IKSAEEDCLE AYEIEPDREE ASNQDEKPRL LWKASTSSPS QKKPRSLWKA STSSPSQNLF  300
LTLTLKTSDV KNSRLFIPVN FTRLHGINKE TEMAMLDKNG VKWSTSLRSE TSGGDRIRLV  360
GGWKEFFKAN CVEIGESIIV KLIWEGDKSC VLEFYSKVKQ ETK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108115KKKNKLKL
2108123KKKNKLKLSKIQNKKK
3122130KKVKKKNKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603572.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603572.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotO230761e-106REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A3P6GP010.0A0A3P6GP01_BRAOL; Uncharacterized protein
STRINGBra007836.1-P0.0(Brassica rapa)
STRINGBo8g099630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-103B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]