PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603497.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 269aa    MW: 31313.4 Da    PI: 5.8889
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.69.4e-34271192103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e+++d+++++++sw++ g sfvv+d+++f+ ++ p yFkh+nf+SFvRQLn+YgF+k++ e+         weF ++ F  g+++ll++
  XP_013603497.1  27 FLTKTFEMVDDPNTNHIVSWNRGGISFVVWDPRSFSATIFPLYFKHNNFSSFVRQLNTYGFRKIEAER---------WEFMNDGFLMGQRDLLKS 112
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++s+
  XP_013603497.1 113 IKRRTSS 119
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-3223116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-5023116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-3524116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.1E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEPSSSSRAW SMPVPMGGLQ EPGPYPFLTK TFEMVDDPNT NHIVSWNRGG ISFVVWDPRS  60
FSATIFPLYF KHNNFSSFVR QLNTYGFRKI EAERWEFMND GFLMGQRDLL KSIKRRTSSS  120
APPSLHHAQG DPCVELRQER HVLMMEISRL RQQEQRARGY IQTMEQRING AEKKQRHMMS  180
FLRRAVQNPA LLQQLLEQQR KELEEASMDQ VKPETVEHVS ELEALALEMQ GHGRQRTEEV  240
ERELDDGFWE ELLIMNKDED GVEANVNAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-231111811131Heat shock factor protein 1
5d5v_B5e-231111811131Heat shock factor protein 1
5d5v_D5e-231111811131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603497.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373040.0AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603497.10.0PREDICTED: heat stress transcription factor A-7b isoform X2
RefseqXP_022563557.10.0heat stress transcription factor A-7b isoform X2
SwissprotQ9M1V51e-149HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLA0A0D3DVA70.0A0A0D3DVA7_BRAOL; Uncharacterized protein
STRINGBo8g098580.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-144HSF family protein