PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603496.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 285aa    MW: 33235.6 Da    PI: 6.3228
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.83e-32271352103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......XTTSEEEEESXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......kekiweFkhksFkkg 89 
                     Fl+k++e+++d+++++++sw++ g sfvv+d+++f+ ++ p yFkh+nf+SFvRQLn+Y ++ +++++++s         + + weF ++ F  g
  XP_013603496.1  27 FLTKTFEMVDDPNTNHIVSWNRGGISFVVWDPRSFSATIFPLYFKHNNFSSFVRQLNTYFWRTSTKRSASSYCemgfrkiEAERWEFMNDGFLMG 121
                     9**********************************************************99999988877555777665449************* PP

                     XXXXXXXXXXXXXX CS
    HSF_DNA-bind  90 kkellekikrkkse 103
                     +++ll++ikr++s+
  XP_013603496.1 122 QRDLLKSIKRRTSS 135
                     ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-4223132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-2923132IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.7E-3324132IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-152750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-2727132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-156577IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-157890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEPSSSSRAW SMPVPMGGLQ EPGPYPFLTK TFEMVDDPNT NHIVSWNRGG ISFVVWDPRS  60
FSATIFPLYF KHNNFSSFVR QLNTYFWRTS TKRSASSYCE MGFRKIEAER WEFMNDGFLM  120
GQRDLLKSIK RRTSSSAPPS LHHAQGDPCV ELRQERHVLM MEISRLRQQE QRARGYIQTM  180
EQRINGAEKK QRHMMSFLRR AVQNPALLQQ LLEQQRKELE EASMDQVKPE TVEHVSELEA  240
LALEMQGHGR QRTEEVEREL DDGFWEELLI MNKDEDGVEA NVNAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-201113411131Heat shock factor protein 1
5d5v_B1e-201113411131Heat shock factor protein 1
5d5v_D1e-201113411131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373040.0AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603496.10.0PREDICTED: heat stress transcription factor A-7b isoform X1
RefseqXP_022563556.10.0heat stress transcription factor A-7b isoform X1
SwissprotQ9M1V51e-144HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLA0A0D3DVA70.0A0A0D3DVA7_BRAOL; Uncharacterized protein
STRINGBo8g098580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-139HSF family protein