PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 117aa MW: 12826.7 Da PI: 9.9675 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45 | 2.7e-14 | 2 | 44 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +k+g+WvAeIr+p +kr r +lg++ ta Aa+a++ a +l+g XP_013603362.1 2 RKWGKWVAEIREP---NKRSRLWLGSYTTAVAAARAYDTAVFYLRG 44 46**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.335 | 1 | 52 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-26 | 1 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.03E-23 | 1 | 54 | No hit | No description |
SMART | SM00380 | 9.6E-28 | 1 | 58 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-8 | 2 | 44 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 2 | 53 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MRKWGKWVAE IREPNKRSRL WLGSYTTAVA AARAYDTAVF YLRGPSARLN FPDLLFQDEG 60 HRSAAAAAVD MPATLIREKA AEVGARVDAL LACSAKSRSP SSPVLVEKPD LNQIPES |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603362.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603362.1 | 1e-80 | PREDICTED: ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q8LC30 | 9e-60 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A0D3DK42 | 3e-79 | A0A0D3DK42_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g019370.1 | 5e-80 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 1e-50 | related to AP2 1 |
Publications ? help Back to Top | |||
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