PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603305.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 206aa    MW: 22927.6 Da    PI: 9.9239
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-055677223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C++Cgk F ++  L  H++ H
  XP_013603305.1 56 ECQYCGKEFANSQALGGHQNAH 77
                    7******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.5E-55381IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.45E-65382No hitNo description
PROSITE profilePS5015711.8015582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSRTCESSSG SSSDKTIKLF GFELISGGNR SPEVTTADSV SSSTKNTTSF IAKRLECQYC  60
GKEFANSQAL GGHQNAHKKE RLKKKRLQLQ ARRASIGYYL TSHHQPMTTS FQRPYKTPSY  120
CAFSSMHVNN QMGVFNDEWS PISSQISFGN KDTSQDIIEQ NGEMGKVYGG VRQNMIQFQR  180
DLTSRSDSKR SIKSLDLHLG MAGDTV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots, young leaves, developing stems, branches, inflorescence meristems, floral meristems and siliques. Expressed at low levels in rosette and cauline leaves. {ECO:0000269|PubMed:21803862, ECO:0000269|PubMed:22762888}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA). Acts upstream of GIS, GIS2, ZFP8 and the trichome initiation regulators GL1 and GL3 (PubMed:21803862, PubMed:22301962). Binds the promoter region of ZFP8, which may be a direct target of ZPF5 (PubMed:21803862). Is not involved in the regulation of trichome branching (PubMed:22301962). Modulates root hair initiation and elongation in response to cytokinin and ethylene signals by directly promoting expression of the CAPRICE (CPC) gene (PubMed:22762888). {ECO:0000269|PubMed:21803862, ECO:0000269|PubMed:22301962, ECO:0000269|PubMed:22762888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603305.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin and ethylene. {ECO:0000269|PubMed:22762888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603305.11e-154PREDICTED: zinc finger protein 5
RefseqXP_013750790.11e-154zinc finger protein 5
SwissprotQ392641e-97ZFP5_ARATH; Zinc finger protein 5
TrEMBLA0A078G5K11e-153A0A078G5K1_BRANA; BnaC08g14290D protein
TrEMBLA0A0D3DNX41e-153A0A0D3DNX4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FS241e-153A0A3P6FS24_BRAOL; Uncharacterized protein
STRINGBo8g059420.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.12e-92zinc finger protein 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Savage LJ,Imre KM,Hall DA,Last RL
    Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins.
    PLoS ONE, 2013. 8(9): p. e73291
    [PMID:24023856]
  3. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]
  4. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  5. Kim SY,Hyoung S,So WM,Shin JS
    The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling.
    Plant Mol. Biol., 2018. 96(3): p. 315-326
    [PMID:29335898]