PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603126.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 296aa    MW: 34355.6 Da    PI: 5.1396
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.12.1e-5061401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r nratksgyWkatgkd++++
  XP_013603126.1   6 LPPGFRFHPTDEELVGYYLHRRNEGLEIEL-EIIPLMDLYKFDPWELPeKsFLPNRDMEWFFFCHRDRKYQNGSRINRATKSGYWKATGKDRKIV 99 
                     79****************************.99**************95334556888************************************* PP

             NAM  94 sk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++      +++ +g++ktLvfy grap g +t+W mheyrl
  XP_013603126.1 100 CQssssssTSSIIGCRKTLVFYLGRAPFGGRTEWAMHEYRL 140
                     *96666555555***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-573164IPR003441NAC domain
PROSITE profilePS5100555.756164IPR003441NAC domain
PfamPF023651.5E-277140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MVRSYLPPGF RFHPTDEELV GYYLHRRNEG LEIELEIIPL MDLYKFDPWE LPEKSFLPNR  60
DMEWFFFCHR DRKYQNGSRI NRATKSGYWK ATGKDRKIVC QSSSSSSTSS IIGCRKTLVF  120
YLGRAPFGGR TEWAMHEYRL FDNDTSQGSL SYKGDFALCR VIKRNEVTLK KCETSSLEVP  180
DEPLTNNVDI PCEARYIGKG SCDASNTLRA SPNFILGSST KGNSQSQTEE DSGFQEFSLP  240
EIEYPPEFFA DLNFDWGMEN PFPFVQYQEA HVNNEVINYD VLRLEPKKSE MKIYDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-49617020174NAC domain-containing protein 19
3swm_B9e-49617020174NAC domain-containing protein 19
3swm_C9e-49617020174NAC domain-containing protein 19
3swm_D9e-49617020174NAC domain-containing protein 19
3swp_A9e-49617020174NAC domain-containing protein 19
3swp_B9e-49617020174NAC domain-containing protein 19
3swp_C9e-49617020174NAC domain-containing protein 19
3swp_D9e-49617020174NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosettes leaves, cauline leaves and stems. {ECO:0000269|PubMed:24285786}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00175DAPTransfer from AT1G32510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603126.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-105CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D141e-105AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603126.10.0PREDICTED: NAC domain-containing protein 86 isoform X1
SwissprotQ9LS243e-85NAC96_ARATH; NAC domain-containing protein 96
TrEMBLA0A0D3DKT50.0A0A0D3DKT5_BRAOL; Uncharacterized protein
STRINGBo8g028730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150291719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.11e-154NAC domain containing protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]