PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602927.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 294aa    MW: 33212.5 Da    PI: 7.9699
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602927.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.24.1e-34158215259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  XP_013602927.1 158 EDGYRWRKYGQKAVKSSPYPRSYYRCTTQKCNVKKRVERSLQDPTVVITTYEGQHNHP 215
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381306.4E-971294IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.802.1E-35142217IPR003657WRKY domain
SuperFamilySSF1182901.7E-29149217IPR003657WRKY domain
PROSITE profilePS5081132.787152217IPR003657WRKY domain
SMARTSM007745.7E-39157216IPR003657WRKY domain
PfamPF031062.0E-26158215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSNETKDLYN YQYPSSFSLY EMMKLPSSAQ SSYGNNGFDH GLHSSPGAYE SLLQKTFGLS  60
PPSSEVFNSS IDQESNLCAT NDVTGETPTR VSASSSSSEA DHPGEDCGKS QRKRELVEDG  120
REENRSSKTV DKTKKKEEKK EREPRVSFMT KSEVDHLEDG YRWRKYGQKA VKSSPYPRSY  180
YRCTTQKCNV KKRVERSLQD PTVVITTYEG QHNHPIPTNL RGSSAAAAMY SANFMNPRSL  240
KHDIFRTAAL DYGYGQSGYG SVNANPSSHQ EYRQGSEYEL LKEIFPSIFF KQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-30147217777Probable WRKY transcription factor 4
2lex_A9e-30147217777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465750.0KC246575.1 Brassica napus WRKY transcription factor 28.2 (WRKY28.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602927.10.0PREDICTED: probable WRKY transcription factor 28
SwissprotQ8VWJ21e-155WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A0D3DMM10.0A0A0D3DMM1_BRAOL; WRKY transcription factor
TrEMBLA0A3P6GDS80.0A0A3P6GDS8_BRAOL; WRKY transcription factor
STRINGBo8g049940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-148WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]